Populus trichocarpa (black cottonwood): 7492048
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Entry
7492048 CDS
T01077
Name
(RefSeq) polyadenylate-binding protein 8
KO
K13126
polyadenylate-binding protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7492048
09123 Folding, sorting and degradation
03018 RNA degradation
7492048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7492048
03041 Spliceosome [BR:
pop03041
]
7492048
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
7492048
mRNA cycle factors
Stress granule specific factors
7492048
Spliceosome [BR:
pop03041
]
Complex C
Other components
Complex C specific factors
7492048
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_ACIN1
RRM_MUD2_C
RRM_3
RBD_DEAH11
RRM_Nup35
RRM_RdRP1_2
RRM_7
RRM_MARF1
DUF4523
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
7492048
NCBI-ProteinID:
XP_002300227
UniProt:
B9GHB4
LinkDB
All DBs
Position
1:31384547..31389370
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AA seq
644 aa
AA seq
DB search
MAQVQVPVQPQSVNAGANNPNFVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDL
TSRRSLGYGYVNYSNPQDAARALEMLNFTPLNGSPIRVMYSHRDPTIRKSGAGNIFIKNL
DKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLND
KQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGD
GKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEA
ADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEA
SRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGPRMPMYPPAGP
GLGQQIFYGQAPPAIIPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRR
AGAGQQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVPMTGVAGGMLPVPYDMGGMPMRDA
ALSQSIPVGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLH
LLESPEALKAKVNEAMEVLRTVQQQATGTADQLASLSLNDNLVP
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagttcaagtaccagttcaaccacagagtgtgaatgcaggggctaataaccct
aattttgtgacgacgtcgctttacgtgggtgatctggaagcaagtgtgactgattcccag
ctgtatgatctgtttaatcaagtgggtcaagtggtttcagtcagggtttgcagggacttg
acgagccgtaggtcccttggctatggttatgttaactacagcaatcctcaagatgctgcg
agggcattagaaatgctgaattttactcccctgaatggaagtccaatcagggttatgtat
tctcatcgtgacccaactattcgcaaaagtggggctggaaatatatttattaagaatttg
gacaaggcaattgaccacaaagctttgcatgatactttttcggcatttgggaacatcctc
tcttgcaaggttgctactgacccatctggccagtctaaaggctatggttttgtgcagttt
gacagtgaagaagctgcccaaaaagcaattgagaaactgaatggcatgctgttgaatgat
aagcaagtttatgtgggaccgttccttcgcaagcaggaaagggacactgctactgacaag
atgagattcaacaatgtctttgtgaagaatctatccgaaacaacaactgaggaggatttg
aacaaaacttttggtgaatttggaaccatcactagtattgtggtgatgagggatggcgat
ggaaaatccaagtgttttggatttgttaactttgagaatgcagaagatgctgctaaagca
gttgaggctcttaacgggaaaaaaattgatgataaggaatggtttgttgggaaagctcag
aaaaaatatgaaagggaagttgaattaaagcagcgatttgagcagagtatgaaggaagca
gctgacaaatttcagggtgcaaacttgtacatcaaaaatttagatgatagcataggtgat
gagaagcttaaggagctgttttctccatttggtacaatcacgtcgtgcaaggttatgcga
gacccaaatggaataagcagaggatcagggtttgttgcattttcaactcctgaagaggca
tctagagctctcttggagatgaatggaaaaattgttgttagcaaacctctatatgttgca
cttgcacaaagaaaggaggatagaagagccaggctacaggctcaattttctcaaatgcga
ccagttgcaatggcaccttcagttggccctcgtatgcctatgtatccccctgcgggtcca
ggtcttggacagcaaatattttatggacaagccccacctgctatcataccaccccagcct
gggtttgggtatcaacagcagctagtgcctggtatgaggcctggcggggctcctatgcca
aatttctttgtgccaatggttcagcagggtcagcagggtcagcgacctggaggtcgacgg
gcaggagctggtcagcaatcccagcagccagtcccacttatgcagcaacagatgcttcct
agggggcgtgtctatcgctaccctccaggacgtggcttgcctgatgttccaatgactggt
gttgctggaggcatgcttcctgttccatatgacatgggtggcatgccaatgcgtgatgca
gcattgtctcagtcaattcctgttggggctttggctactgcacttgcaaatgctactcca
gatcagcagagaacgatgcttggcgaaaatctgtaccctctcgtggaacagctggagcct
gaagcagcggctaaagtgacaggcatgcttctggagatggatcaaactgaggttctgcac
ttgcttgagtcaccagaagctctcaaagcaaaggttaatgaagcaatggaggttctaagg
actgttcagcagcaggccactggcacagctgatcaactagcttctttgtcattgaatgac
aaccttgtgccctag
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integrated database retrieval system
