Populus trichocarpa (black cottonwood): 7492084
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Entry
7492084 CDS
T01077
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7492084
09122 Translation
03013 Nucleocytoplasmic transport
7492084
03015 mRNA surveillance pathway
7492084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7492084
03041 Spliceosome [BR:
pop03041
]
7492084
03009 Ribosome biogenesis [BR:
pop03009
]
7492084
03012 Translation factors [BR:
pop03012
]
7492084
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7492084
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
7492084
mRNA cycle factors
Stress granule specific factors
7492084
Spliceosome [BR:
pop03041
]
Complex C
Other components
EJC/TREX
7492084
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
Helicases
7492084
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
eIF-4
7492084
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
NAT10_TcmA_helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
7492084
NCBI-ProteinID:
XP_024457371
LinkDB
All DBs
Position
5:6584436..6589358
Genome browser
AA seq
407 aa
AA seq
DB search
MATSVVPAGRSARRAAAEDEKLVFETTEGVEPVASFDEMGLKEDLLRGIYNYGFEKPSAI
QQRALMPIIKGRDVIAQAQSGTGKTSMIALTVCQLVDTASREVQALILSPTRELAEQTQR
VITVIGENINIQVHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIRVL
VLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVKILVKRD
ELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNTKRKVDWLTAKMVEFNFTV
SSMHGDMPQKERDAIMSNFRSGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNIGDLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaagcgtagtaccagcggggcgcagcgcgcggagggcggcggcggaggatgaa
aagctggtgtttgaaacgacggagggagtagaacctgtggcaagtttcgatgagatggga
ttaaaagaagatttattgagagggatttataattatggatttgaaaagccatcagcaata
caacaaagagctttaatgccgataattaaaggccgtgatgttatagcgcaagctcaatct
ggtactggaaagacttctatgattgctcttactgtttgtcagctcgttgatactgctagc
agagaggtccaggcattgatattgtcacctacaagggaactggcagagcagacacagaga
gtgataactgtaattggtgaaaacattaatatacaagtacatgcatgcattggaggaaaa
agtgtgggcgaggatattcgaaaactagaacatggagttcatgtagtttctgggactcct
ggcagagtctgtgacatgatcaagaggaggtcattacgcacaagagccatcagagtacta
gttcttgatgaatctgatgagatgttgagcagagggttcaaggatcaaatctatgacgtg
tacagatatctcccacccgagcttcaggttgtcttgatttctgctactcttcctaatgaa
attttggagattactagcaagttcatgacagatcctgtaaagattcttgtgaaacgtgat
gagttgactctggagggcatcaagcaattttttgttgccgtggaaaaagaagaatggaaa
tttgagactctgactgacctttatgatactcttaccatcactcaagctgttattttctgc
aatacaaagcgaaaggttgattggctaactgccaagatggttgaatttaatttcactgtc
tcatcaatgcatggtgacatgcctcaaaaggagagagatgcaattatgtctaatttccgg
tctggtgaaactcgtgtactgatcacaactgatgtttgggctcgggggcttgatgttcaa
caggtttctctggtgattaactatgaccttccaaacaatcgagagctttacattcatcga
attggtcgttctggtcgttttggacggaagggtgttgctattaacttcgtcaaaagtgat
gatatcaggattttaagagatattgaacagtattacagcacccagattgacgaaatgcct
atgaacatcggtgatctgatataa
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integrated database retrieval system
