KEGG   Populus trichocarpa (black cottonwood): 7492107
Entry
7492107           CDS       T01077                                 
Name
(RefSeq) cyclin-T1-3
  KO
K15188  cyclin T
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    7492107
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7492107
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     7492107
    Brd4/P-TEFb complex
     7492107
    7SK RNP complex
     7492107
SSDB
Motif
Pfam: Cyclin_N CycT2-like_C Cyclin_C MRP-S34 TFIIB Cyclin_C_2 RE_TaqI
Other DBs
NCBI-GeneID: 7492107
NCBI-ProteinID: XP_024457733
LinkDB
Position
5:6932814..6938196
AA seq 625 aa
MENSMAGESSRSEMNNGGLYINSQEKLEEGGRWYLSRKEIEENSPSKQDGIDLKKEAYLR
KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETP
RPLKDVILVSYEIIHKKDPEAVQRIKQKEVYEQQKEIILLGERVVLATLGFDFNLLHPYK
PLVDAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD
GEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPPSANSEAEGSIVDGASHLASSKASSGN
EEQLATNSPSHTGGISSRPRPSKPMSKPVHKQPHADNHVGPPRTSQNHGNDHGSAEIRSA
SDHNMDGEPKDDLHHEREAFPSQDNMREGHTFRRSSDWLGNKDQERNVARSETKDLGESK
DKHFGRFVEHREGMLGQSPQDAIKKIDKDKVKAALEKRRKSRGDITRKTDFLDEDDLIER
ELEDGIELAAESEKNKRDRRQSWSKPLDREEYESSHHGKNMDARDEQHHGMRGQLSQRPD
RNNIEDGELSAPDDMYQGFPSPKSSNRKRKASSPPDRKSEGEHRTDNAPGSHHYNHHDCT
DDRNRMNRFGYLERDHKRHVPENHA
NT seq 1878 nt   +upstreamnt  +downstreamnt
atggaaaattcaatggctggtgagtcatctcgttctgaaatgaacaatggcggactgtac
ataaattctcaggaaaaacttgaggaaggtggccgttggtacttatctagaaaggaaatt
gaagagaattctccatctaaacaagatggcattgacttaaagaaagaggcttatctacgc
aagtcatactgtacatttctacaagatttgggcatgagacttaaagtgccccaggtaaca
attgctactgcaataattttctgtcaccgattctttcttcgtcaatcccatgcaaagaat
gataggaggactatcgctacagtttgtatgtttcttgcggggaaggtagaggagactccc
cgtccactgaaagatgttattcttgtttcttatgagattatacataaaaaggatcctgaa
gcagttcagaggatcaagcaaaaggaggtatatgaacaacagaaggaaataattttactt
ggagagagggttgtacttgcaactcttggttttgatttcaatttgctccatccatataaa
cctcttgttgatgctataaagaaatttaaggttgctcaaaatgcccttgctcaagttgca
tggaattttgtgaatgatggactgcgtacatctctttgcttgcaatttaagccccaccac
attgcggcaggtgccattttccttgctgcaaagttcctcaaagtaaagctcccatcagat
ggcgagaaggtctggtggcaagagtttgatgtcaccccacgccaattggaggaggtaagc
aatcagatgctggaactgtatgaacagaaccgggtgcccccttcagctaacagtgaagct
gaagggagcatagtagatggagcttctcatctggcctcatcaaaagcttcatctggcaat
gaagaacagttggcaactaatagtccttctcacactggaggtattagttcaagacctaga
ccctcaaagccaatgtctaaaccagtgcacaagcaacctcatgcagataatcatgttggt
cctccaagaaccagccaaaatcatggcaatgaccatggaagtgcagagataagaagtgcc
tctgaccataatatggatggtgaacccaaagatgatctgcaccatgagagagaggcattt
ccttcccaggataatatgagggaaggccatacctttaggcgatcttcagattggcttgga
aataaagatcaagaaaggaatgttgcaagaagtgaaacaaaagatttaggagaatcaaaa
gataaacattttggtcgatttgtggagcatagagagggtatgttaggtcaatcaccccaa
gatgctattaaaaagattgataaagacaaagtgaaggcagctttggagaaacgaaggaag
tcccgaggagacataactcgaaaaactgacttcttggacgaggatgatctcattgagagg
gaactggaagatggaattgaactagctgctgaaagtgaaaaaaacaagcgtgatagaaga
caaagctggtccaagcccttggacagggaagaatatgagagctcacatcatgggaagaat
atggatgcaagggatgaacagcatcatggaatgagggggcagttatcacaaaggccagat
cggaacaatattgaagatggggaactgtcagctcctgatgatatgtaccaggggtttccc
tcacccaagtcaagtaatcgcaaacgtaaggcatcaagtccacctgacagaaagtctgag
ggggagcatcggactgataatgccccagggtctcaccattataatcatcatgattgtaca
gatgatcgaaacaggatgaaccggtttggttatttggagagagatcataaaaggcatgtc
ccagaaaatcacgcctga

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