Populus trichocarpa (black cottonwood): 7492129
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Entry
7492129 CDS
T01077
Name
(RefSeq) DNA mismatch repair protein MLH3 isoform X1
KO
K08739
DNA mismatch repair protein MLH3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
7492129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7492129
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
7492129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
7492129
NCBI-ProteinID:
XP_006382999
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Position
5:complement(7375873..7384438)
Genome browser
AA seq
1234 aa
AA seq
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MGIIKRLPVSARSTMRSGILVFDLTRVVEELVFNSLDAGAKKVSVYVAVGTCYVKVSDDG
CGISRDGLVLLGERYVTSKVQRLADMDVASGNFGFRGEALSSIADVSVLDVLTKARGMPN
GYRKVMKGSKCLCLGIDDDIKDVGTTVVVRDLFYNQPVRRKYMQSSPKKILHLVKKCALR
VALMHSEVSFKVVDIESDEELLCTNPSSAMSLLMSGFGIEDSSSLHELNISDSVLKLSGY
ISGPCSSFFIKAFQYVYINSRFVCKGPIHKLLNHLASRFEHPDLQKANSVSQKGKKSRPQ
PCPAYILNLSCPFSLYDLTFEPSKTHAEFKDWNPILAFIEKVIQQLWRECTVIGESSTRA
TDTFQKNDIWQEGNDITSVKQDFFDADFSGFAIKKGGVKIHQSSHHLISCPLKMLDKEVD
HLFHGKHDKVPQEFYSNVSEFKEEQVDKEFVLQGDYSSQTWNGSISGYMPRATKTDECHL
LTSDKNFLLTDNCFLEDSFTTRERLSDHMQSHFSSSEWQNESPKIDSVARNKSLGSAFSF
DHYGFRNELPFSKSNIKPILQSCSSQKSLSLDRDFFADKEAFEFLNDGFKNKRRRLWTAE
NVGIPKGDTIFDIFPCALLQDNASCTQQLPADTDGAEMSAAFDLLPGAYVNSSSPNGKIL
AKGKGLASNSILQLEMYASGNHSSMSDWCSVTSSAFFQAKVWDAEHFPDDNASEGSKGWG
KKENCWHLPDSWEIMSKPSSQDNFFSSCTSSVLDFKNSADSSKDICKLPQWQDQNNEFSL
QHSDISVGETDWLLLDPGSKDPKRNDECERQENQLRYKACVRDRVAKERYRRSNSTPPFY
RLKRRFISLNNHSMRKEEEPYTQLFHDWLTSPEANDFEHLPLQPSHVEEDLTQRTKSNGK
NMPDTMPNKETPEGNPEHFQHPKAYDSSPEAFMPKDTQESMDYRIKWRNGCQQIANHNTS
SNVGSQRNILDISSGFLHLAGNLLVPESIHKKCLQDARVLHQVDKKFIPIVAGGTLAVID
QHAADERIRLEELRQKVLSGEEKTVTYLDAEQELILPEIGYQLLHNYAEQVREWGWICSI
QGSGTFKKNLNILHQQPTVITLLAVPCILGVNLSDGDLLEFLQQLSDTDGSSTLPPSVLR
VLNYKACRGAIMFGDSLLPSECSLIVEELKQTTLCFQCAHGRPTTIPVVNLEALQKQVAK
LGVLNDGSNDLWHGLRRQELSLERAAQRLSAARG
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgggtataattaagcgattgccggtgtcagcacgcagcacaatgcgttcagggatcttg
gtgtttgatttaacaagagttgtagaggagcttgtttttaatagcttggatgctggtgct
aaaaaggtttcggtttacgtggctgttggtacctgctatgtgaaagtttctgatgatgga
tgtgggatttcacgggatggattggtgttactgggagaaagatacgtgacctcaaaggtt
caacgtttggctgatatggatgttgctagtggaaactttggcttccggggagaagcgttg
tcttctatcgctgatgtctcagtgttagatgtattgacaaaagctcgtggaatgccgaat
ggatatcgcaaggtcatgaagggatctaagtgtttgtgtttgggaattgatgatgatatt
aaagatgtcggcactacagttgttgtccgtgatttattttacaaccaaccagttcggagg
aaatatatgcaatccagccctaagaagatactgcacttggtaaaaaaatgtgcacttcgt
gttgctcttatgcattcagaggtgtcctttaaagttgttgatattgaaagtgacgaggag
cttctctgcacaaatccatcttctgcaatgtcactgttgatgagtggatttggaattgaa
gattccagctctcttcatgaactgaatatcagtgacagtgtattaaagctttctggctat
atatctggtccttgcagtagttttttcatcaaggctttccaatatgtttatatcaattca
cggtttgtttgcaaaggcccaattcacaaattgctaaatcacctggcctctagatttgag
catccagatctgcagaaggctaacagtgtgtctcaaaaaggaaagaaaagcaggcctcaa
ccatgtccagcttatattttaaatttgagttgccctttctctctctatgatttaaccttt
gagccatcaaagacacatgctgaattcaaggattggaaccctatccttgccttcattgag
aaggtcattcaacaactctggagggaatgcaccgttattggagaatcctcaactcgggca
acagatacgttccagaaaaatgacatttggcaggaaggtaatgatatcacatcagtgaaa
caagatttttttgatgcagatttttctggatttgcaataaagaaaggcggggttaaaatt
caccagtcttctcatcatctcatttcttgccctttgaagatgctagacaaagaggtcgac
catctttttcatgggaagcatgataaagttcctcaagaattctactcaaatgtttcagaa
ttcaaagaggaacaagttgataaggaatttgttcttcagggtgactactcttcccaaaca
tggaatggatccatctctggatacatgccaagagcaaccaaaacagatgagtgtcatctc
ttgacatctgataagaattttttattgacagataattgcttcttggaagatagtttcact
accagggaaagactcagtgatcacatgcagagccatttctcaagctcagaatggcaaaac
gagtccccaaaaattgattccgtggcaagaaataaatctcttgggagtgcattctccttt
gatcattatggattcagaaacgaattaccgtttagcaagagtaatataaaacccatttta
cagagttgctcctcacagaaaagcctgtcacttgatagggatttttttgctgacaaggaa
gcatttgaatttcttaatgatggcttcaagaacaaaagaagacggctttggacagctgaa
aatgtgggtatcccaaaaggggatacgatatttgatatctttccctgtgctttactgcaa
gacaatgcatcgtgtactcagcagttgcctgcagatactgatggagctgagatgtctgca
gcttttgatcttctgccaggtgcttatgtaaattcttcttcaccaaatggaaaaatttta
gctaaagggaaaggtcttgcatctaattctatcctacaattagaaatgtatgcctcagga
aatcattcatcaatgtctgattggtgttctgtaacttcaagtgctttttttcaagcaaaa
gtttgggatgctgaacactttccagatgataatgcaagtgaggggagcaagggatggggt
aaaaaggaaaattgttggcatcttcctgatagctgggagattatgtcaaagccttccagc
caagataacttcttctcaagttgtacaagcagtgtgttagattttaaaaattcagctgat
tctagtaaagatatctgcaaattgcctcagtggcaggatcaaaataatgaattttcttta
caacattcagatatatctgttggtgagacagactggctccttttggacccaggttctaaa
gatcctaaaaggaatgatgagtgtgaaaggcaagagaatcaactaagatataaagcttgt
gtacgagatcgtgttgccaaagaacgatatagaagaagcaattcaaccccaccattttac
agactgaagaggaggtttatttccttaaacaaccactcaatgaggaaagaagaagagcca
tacactcagttgttccatgattggctcacttctccagaagctaatgactttgagcatcta
cctctccagcctagtcatgtggaggaggatttaacacaaagaaccaaatccaatggaaag
aacatgccagataccatgccgaacaaggagactccagaaggaaatccagagcacttccaa
caccctaaggcttatgattcttcacctgaagcctttatgccaaaggacacccaggagtca
atggattataggatcaaatggcggaatggctgccaacaaattgcaaatcacaacacgtca
tccaatgttggcagtcagcgaaatatacttgacatctcttcggggttcttgcatcttgct
ggaaatttattagttccagaatctattcataagaagtgccttcaggatgccagagtcctt
catcaggtagacaagaaattcatcccaattgtagctggtgggacacttgctgttatagac
cagcatgcagcagatgaaaggattcgactggaagaacttcgtcaaaaggtattatctgga
gaagagaagacagttacctatcttgatgctgaacaagagctgatacttcctgaaataggg
tatcagctacttcacaattatgctgaacaagtaagagaatggggatggatctgcagtatt
caaggttcagggaccttcaagaagaatttgaatattctccaccagcagccaactgtgatt
acacttcttgcagtaccatgcattttaggggtcaatttgtctgatggagatctcttggaa
tttctgcagcagctttctgatacagatggctcttcaactttgccgccatctgttcttcgt
gtcctcaattataaagcatgcagaggcgcaatcatgttcggagattcgttgctaccatca
gaatgttcacttattgtcgaagagctaaagcagaccacactttgttttcaatgcgcccac
gggcgaccaacaactattcctgttgtcaacctggaggcgttgcaaaagcaggtagcaaaa
cttggagtgctaaatgatggttcaaatgacttgtggcatggattacgccgacaggaactc
agccttgaacgtgcagcacagcgtttaagtgcagctagaggctag
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integrated database retrieval system
