Populus trichocarpa (black cottonwood): 7492412
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Entry
7492412 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7492412
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
7492412
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
7492412
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
IstB_IS21
AAA_22
RNA_pol_3_Rpc31
TonB_N
nSTAND3
PhoH
Microp_apicomplexa_4
Motif
Other DBs
NCBI-GeneID:
7492412
NCBI-ProteinID:
XP_002315703
UniProt:
B9HU90
LinkDB
All DBs
Position
10:6826825..6833279
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AA seq
1180 aa
AA seq
DB search
MNNTLSILSSPYISKFNASLFPPHLPQTLGFYCLQKPKPKPKPKPKPRSLNSFRLLSFSN
SPNSFIPAESQLSDADNDEEEEYEDDEDDDEEEDEAADEYDDISEAIEEETETEISVDAS
SSEVSNWRKESKWQRVEKLCNEVKEFGNEIIDANELASIYDFRIDKFQRLAIEAFLKGSS
VVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFRDFRETFGDENVGLLTG
DSAINKDAQVLIMTTEILRNMLYQSIGMVSSGSGLFHVDVIVLDEVHFLSDISRGTVWEE
IIIYCPKEVQLICLSATVKNPDELSGWIREVHGETELVTSSRRPVPLTWHFSTRHSLYPL
LDEKRKHMNRKLSLNYLQLSASRVKSYKDDGSRRRNSRKRGSNMGFDSIGNMSEEPLSKN
DISRIRRSQVPQVVDTLAQLKARDMLPAIWFIFNRRGCDAAVQYLEGCRLLDECEASEVE
LALKRFSVQNPDAVRETAVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLIKVVFATETLA
AGINMPARTAVISSLSRRSSSGRIPLSPNELLQMAGRAGRRGIDERGHVVLVQASNEGAE
ECCKLLFAGLEPLVSQFTASYGMVLNLLAGAKITRRSNESNEMKVLQAGRTLKEARKLVE
KSFGTYIGSNVMLASKEELAKIQKEIEMLTSETSDDAIDRKSRKILSDGAYKEIAILQEQ
LREEKRLRTELRRKMETKRLNALKILLKELGNDRLPFLCLKYKDSEGVEHSVPAVYLGNA
DSFDGSKFKNMVSDIDSLAQTVAPIESNVSEVETHKDVEPSYHVALGSDNSWYLFTEKWI
KTVYRTGLPNVALSLGDDLPHEVMWMLLDREEKQWEKLAESELGGLWYMEGSLETWSWSL
NVPVLNSLSEIDEVLHMSQAYHDAVESYKDQRNKVARLKKTIARTEGFKEYKRILDWKNF
TEDKIKRLKMRSNRLSERLQEIEPSGWKEFLKISNVVHESRALDINTQVIFPLGETAAAI
RGENELWLAMVLRSRILLDLKPGQLAAVCASVVSEGIKVRAWENNNYIYEPSSAVINVIN
ILNEQRSNLSKLQEKHGVEITCCLDSQFSGMVEAWAAGLTWKEMMMDCAMDDGDLARLLR
RTIDILAQIPKLPDIDPVLQSNAKTASSIMDRPPISELTG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacactctctctatcctttcctctccatacatttccaaattcaatgcttcccta
ttccctcctcatcttcctcaaaccctaggattctactgccttcaaaaacccaaacccaaa
cccaaacccaaacccaaaccgagatcattaaattcatttcgactcctctccttctccaac
tccccaaactctttcattccggccgagtcgcaactctccgatgcagacaacgacgaagaa
gaagagtacgaagatgacgaagacgacgacgaagaggaagacgaagctgctgatgaatac
gacgatatttcggaggcaatcgaagaagaaacagaaaccgaaatatcggtcgatgcgagt
agtagtgaagtatcaaattggcgcaaggaatccaagtggcagagagttgaaaagctctgt
aacgaagtcaaagagtttggaaatgaaattattgacgctaatgaacttgcttccatttac
gatttccgcatcgacaaatttcagcggttggcgatagaggcgtttttgaagggatcatcg
gtagtggtatcggcaccaacaagcagtggaaagacattgatagctgaagctgcagcagtt
gctactgttgctagaggaaggaggattttctacaccactcctcttaaggctttgtccaac
cagaaatttcgtgattttcgggagacgtttggggatgagaatgttggtcttctcacagga
gattctgccatcaataaagatgcccaagttttgattatgacaacagagattttgcgaaac
atgttgtatcaaagcattgggatggtttcttctgggagtggacttttccatgttgatgtg
attgttttggatgaagttcattttctaagtgatatatctcgtggtactgtatgggaggag
ataattatttattgcccgaaagaagttcaactgatatgtttatcagcaacagtcaagaat
ccagatgagctgtctggatggattcgtgaggttcatggtgaaactgaactggtgacatca
tcaaggcgtccagttccattgacttggcacttctctaccaggcattctttgtatcccctt
cttgatgagaaaagaaagcacatgaataggaagctgtcgctcaattatctacaactttct
gcttcaagagttaaatcttacaaggatgatgggtcgagaagaaggaattcaagaaaacgt
ggaagcaacatgggctttgatagtattggtaacatgtctgaagaacccctttcgaagaat
gatataagcagaatacgccgttcacaggtgcctcaagttgttgatacactagcacagctt
aaggcaagggatatgctgcctgcaatttggtttatttttaaccgaagaggatgtgatgcg
gctgtgcagtaccttgaaggttgcaggctcttagatgaatgtgaggcaagtgaggttgaa
ctggctttgaagaggttcagtgttcagaatcccgatgctgtcagggagactgctgtcaaa
ggacttctaagaggggttgctgcgcatcatgcaggatgtctccctctatggaaatctttt
attgaggaactgttccagagaggacttattaaagttgtctttgctacagaaacactagct
gctggaatcaacatgcctgctaggacagctgttatctcgtctctcagcaggaggagtagt
agtggacgtatcccattaagcccaaacgagcttcttcaaatggccgggcgagctggtcgt
agaggcattgatgaaaggggccatgttgtgctggttcaggcttccaatgaaggtgcagaa
gagtgctgcaagcttctatttgctggactagaacctcttgtatcacagtttactgcttcc
tatgggatggtgctgaatcttcttgctggtgcaaaaattactcgtagatcaaacgaatca
aatgaaatgaaggttctccaggcagggagaactttgaaagaagccaggaaactagttgag
aaaagttttggaacatatattggcagcaatgtgatgcttgcttcaaaagaggagctagct
aaaatacagaaagagattgaaatgctgacctcagaaaccagtgatgatgctatagataga
aagagcaggaaaatcctatctgatggggcatacaaggagattgcaattttacaagaacaa
ttgagggaagagaaacgcctgcggactgaattacgcagaaagatggaaacaaagagatta
aatgccctgaaaattttattgaaagagttaggaaatgatcgtttaccctttttgtgcttg
aaatacaaagattctgaaggagtggaacattcagtgcctgctgtttatttggggaatgct
gattcatttgatggttcaaaatttaaaaacatggtttctgacattgattcattagcacag
actgttgcacccattgagtctaatgtaagtgaagttgaaactcataaagatgttgagcca
tcttatcatgtagctcttggttcagataactcttggtatctgtttacagaaaaatggatc
aaaactgtttataggacaggccttcctaatgttgccttgtctctaggggatgatttgcca
catgaagttatgtggatgcttcttgatagggaggagaagcagtgggaaaagcttgctgaa
tctgaacttggtggtttatggtacatggaaggatctctcgagacatggtcgtggagctta
aatgtgcctgttttaaatagtctctctgagattgatgaggtgttacacatgtcacaagct
taccatgatgcagtagaaagttacaaggatcaaagaaacaaagttgcacgtttgaaaaaa
acgatagcacgtactgaaggctttaaagaatataagaggatcctagactggaagaatttt
acagaggataagattaaacgcctcaagatgagatcaaaccgtttgagcgaacggctgcag
gaaatcgaaccatctggttggaaagaattcttaaagatcagcaatgttgtacatgaaagc
agggccttggatatcaacacacaagtaatatttcctcttggtgaaaccgcagctgcgatt
cgaggagaaaatgaactgtggcttgcaatggttcttagaagtagaatccttttggatttg
aaacctggacaactcgcagctgtctgtgcaagtgtagtttctgaagggatcaaagttcgt
gcctgggaaaataacaactacatctacgaaccttcttccgcagtaatcaatgttatcaac
atcttaaatgagcagagaagtaacctttcgaagcttcaagaaaaacatggggtagagata
acctgttgtttggatagccaattttcaggtatggttgaagcctgggctgcagggctcaca
tggaaggagatgatgatggattgtgcaatggatgatggggatttagctcgccttctgcga
cgaacaattgatatattggctcagattcctaaattacccgatattgacccagttttgcaa
agcaatgcaaagacagcatccagcatcatggaccgtccaccaataagtgaactgactgga
tag
DBGET
integrated database retrieval system
