Populus trichocarpa (black cottonwood): 7492477
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Entry
7492477 CDS
T01077
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7492477
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
7492477
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RL
DUF1797
TGF_beta
DUF7787
Motif
Other DBs
NCBI-GeneID:
7492477
NCBI-ProteinID:
XP_024457316
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All DBs
Position
5:20181013..20187489
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AA seq
436 aa
AA seq
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MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQY
YTDVQPTIRGRNVYIQFSSHQELTTMDQNTQGRGEEPNRILLITIHHMQYPITVDVLHQV
FSPHGFVEKMVTFQKSAGFQALIQYQSRQSAVQARTSLQGRNIYDGCCQLDIQFSNLDEL
QVNYNNDSSRDFTNPNLPSEQKARSSQQPSYGDVVGYPQMPNAAAIAAAFGGGLPPGISG
TNDRCTILVSNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH
FLKGAMLFGKRMEVNFSKHPNITQGADTHEYMHSNLNRFNRNAAKNYRYCCSPTKMIHLS
TLPQVITEDEIVSLVEEHGTVVNTKLFEMNGKKQALVLFETEEEATEALVCKHATSLAGS
IVRISFSQLQSIRENQ
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagccttccaaagttatccatgttcgcaacgtggggcatgagatttctgaaaat
gacttgcttcagctgttccagccatttggggttataacgaagcttgttatgcttcgtgct
aaaaatcaggctctccttcaaatgcaagatgttccttcagccatcaatgctcttcaatac
tatacagatgttcagccaactataaggggaaggaatgtttatattcaattctcatcgcat
caagaactgactacaatggatcaaaatactcaagggcgaggagaagagccaaatcgaatt
ctgttaattaccatccatcacatgcaatatcctattacagtggacgtgctgcatcaagtt
ttttccccccatggatttgtggagaagatggtcacatttcagaagtcagctggttttcaa
gcccttattcaataccagtcacgccagagtgctgttcaggctaggacttctcttcagggg
cgcaatatctatgatggctgctgtcagctggacattcagttttcaaacctggatgagttg
caagtgaactacaacaatgacagctcaagggatttcactaatcctaacctgccttcagaa
cagaaagccagatcttcccaacagccatcatatggcgatgtagttggatatcctcagatg
cccaatgcagctgcaattgctgctgcctttggtggaggtttgcctcctggaattagtggg
acaaatgataggtgcacaattcttgtctccaatttaaatcctgatagaatagatgaggac
aagcttttcaacctgttttctctctatggaaacatagtgcggattaagcttcttcgcaac
aagcctgatcatgcacttgttcagatgggggatggtttccaagctgaattggcagtacat
tttttgaagggtgccatgctttttggaaagcgaatggaggtcaacttttcgaagcatcca
aacataactcaaggtgctgatacgcacgagtacatgcactctaatctgaatcgcttcaac
cgtaatgctgcaaagaactaccgatactgctgttcaccaacaaagatgattcatctttcc
actttacctcaggtcatcactgaggatgagattgtgagtcttgtagaggagcatggcacc
gttgtgaacaccaagctctttgagatgaatgggaagaagcaggcgcttgttctgtttgaa
accgaggaggaggccacagaagccctcgtgtgcaagcatgctacttcacttgctgggtcg
attgtccgaatctcattctcccagctacagtccattagagaaaaccaataa
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