Populus trichocarpa (black cottonwood): 7492491
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Entry
7492491 CDS
T01077
Name
(RefSeq) protein PIGMENT DEFECTIVE 338, chloroplastic isoform X1
KO
K02945
small subunit ribosomal protein S1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
7492491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
pop03011
]
7492491
Ribosome [BR:
pop03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
7492491
Bacteria
7492491
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RLSB_S1
S1
S1_RRP4
DUF8529
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
7492491
NCBI-ProteinID:
XP_024456047
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All DBs
Position
5:20429667..20434020
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AA seq
521 aa
AA seq
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MQTLLQPCKSLTIFSSSLPPHSNNLVITQSSIVHQNKCPKSPCFHSFCTSGTSAKNPPLW
RSAHISLCSQNDAFDDFSSTQLPEKAQDDRIQENEELELLNKPSPVVFNNGLDVEAVKES
EKPGKDEALAPFLKFFKSNDSLDGVSEDDGDSGVVEERIDMDNEDKEARKINVDYYNPKP
GDFVVGVVVSGNENKLDVNIGADLLGTMLTKEVLPLYDKEFEFLLCDTKKDAKEFMVKGK
MGIVKDDVAMSRGPPGLGKPVVETGTVLFSEVLGRTLSGRPLLSTRRLFRRIAWQRVRQI
KDLNEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFKELKENVGRQIYALINRI
NESNNELILSEREAWEMINLREGTLLEGTVKKLFPYGAQVRIGETNRSGLLHVSNITRTR
VSSVSDLLKVDEKVKVLVVKSMFPDKISLSIADLESEPGLFVSNKEKVFAEAEEMAKKYQ
QNLQASSTNLKSEIPSSKNTLSSDIEAALYANWKWFKFERE
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacccttcttcaaccctgtaagtctctcactatcttcagctcctcactaccacct
catagcaacaacttagttatcacgcaaagtagcatagtccatcaaaacaaatgtccaaaa
tctccgtgttttcactcattctgtacttctggcacttcggccaagaaccccccactttgg
agaagtgcccacatttcattatgctctcaaaatgatgcatttgatgatttctcgagtacc
caactgcctgaaaaggcacaggatgatagaattcaagagaatgaggagctagaattgtta
aataagccatctccagtggtttttaataatggtttagatgtagaagctgttaaggaatct
gaaaaacctggtaaagatgaggccttggcgccttttttgaagttctttaagtctaatgat
tcattggatggagtgagtgaggatgatggtgattcaggtgttgtagaggagagaattgac
atggataatgaagataaggaggctaggaagattaatgtggattattataacccaaaacct
ggtgattttgtggttggggttgtggtttctggtaatgagaataaacttgatgtgaatatt
ggggcagatttgttgggtacgatgctaacaaaggaggtgctgcctttgtatgacaaagag
ttcgagtttttgttgtgtgatacgaagaaggatgccaaggagtttatggttaaagggaag
atgggaattgttaaggatgatgttgcaatgagcaggggcccaccagggttagggaagcct
gttgtggagactggaactgtgttgttttcagaggttcttggaaggacactgagtggaagg
ccactgctttccactagacgacttttccggcggatagcttggcaacgagtgaggcagatc
aaagatctgaatgaacctattgaggttaaaatttcagaatggaatactgggggcctactt
acgagaattgagggattgcgggctttcctgccaaaggctgagttgttgaatagagtaaac
aatttcaaggagttgaaagaaaatgtgggtcgccaaatatatgcactgattaatcgaata
aacgagtctaataatgagttgatactcagtgaaagggaagcttgggaaatgataaacctc
agggagggaacacttcttgaaggaactgttaagaaactttttccatatggagcccaagta
agaataggtgaaactaaccgtagcgggctgctgcatgtctcaaatatcacacggactcgt
gtttcatctgtcagtgacttgcttaaagttgatgaaaaggttaaagtcctagttgtaaag
tcaatgtttcctgacaaaatatctctcagtattgctgaccttgaaagtgagcctggtctg
tttgtatcaaacaaggagaaagtgtttgctgaggcagaagagatggcaaagaagtaccag
caaaatctacaagcgagttcaacaaatttgaagtcagaaatcccttcaagcaagaatacc
ctatcttctgacattgaggcagcattatatgcaaactggaagtggttcaaatttgaaagg
gagtga
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