Populus trichocarpa (black cottonwood): 7492498
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Entry
7492498 CDS
T01077
Name
(RefSeq) 2-dehydro-3-deoxyphosphooctonate aldolase isoform X1
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00541
Biosynthesis of various nucleotide sugars
pop01100
Metabolic pathways
pop01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
7492498
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pop01005
]
7492498
Enzymes [BR:
pop01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
7492498
Lipopolysaccharide biosynthesis proteins [BR:
pop01005
]
Lipid A
7492498
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
Motif
Other DBs
NCBI-GeneID:
7492498
NCBI-ProteinID:
XP_024457382
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Position
5:complement(20507504..20513659)
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AA seq
290 aa
AA seq
DB search
MDSSTALFDQLKVAEPFFLLAGPNVIESEEHILRMANHLKTISTKVGLPLVFKSSFDKAN
RTSSKSFRGPGMSEGLKILEKVKIAYDIPIVTDVHETIQCEPVGKVADIIQIPAFLCRQT
DLLVAAAKTGKIINIKKGQFCAPSVMSNSAEKVRLAGNPNVMVCERGTMFGYSDLIVDPR
NLEWIREANCPVVADITHSLQQPAGRKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME
VHDDPLNAPVDGPTQWPLRHLEELLEELVAIAKVSKGKKPMNIDLTPFHE
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggattcctcaactgctttgtttgaccagctcaaggtagcagaaccatttttcttgtta
gcgggacccaatgtgattgaatctgaagaacacattcttagaatggccaaccatctcaag
actatctccaccaaagttgggttgccactggtttttaaatcaagctttgataaagctaac
aggacatcctcaaaatcatttagaggtccaggaatgagcgaaggcttgaagatccttgag
aaggttaaaatagcatatgacatccccattgttactgatgtgcatgaaacaattcagtgt
gaaccagttggcaaagttgcagatatcattcagattccagcctttttatgtcgtcagaca
gatcttctagttgcagctgccaagactgggaaaattatcaatattaagaaaggccaattc
tgtgctccttctgtcatgtcaaattctgctgagaaggtaagattggctggaaatccaaat
gtcatggtttgtgagaggggaactatgtttggctatagtgatttgattgttgatccgcgt
aatttggaatggatcagggaagctaattgtcctgttgtagctgacatcacacattcacta
caacagcctgctgggagaaagttggatggtggaggtgttgctagtggaggtcttcgtgaa
ttgataccatgcattgcaaggacagcagtggccgttggggtggatggaattttcatggag
gttcatgatgatcctctgaatgccccggtggatggtccaactcagtggcctctacgccat
ttagaggagctgctagaagagcttgtggcaatagctaaggtaagcaaggggaagaaaccg
atgaacattgatctcacaccatttcacgaatag
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