Populus trichocarpa (black cottonwood): 7492759
Help
Entry
7492759 CDS
T01077
Name
(RefSeq) protein SUPPRESSOR OF PHYA-105 1 isoform X1
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
7492759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7492759
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
7492759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Pkinase
Beta-prop_TEP1_C
EIF3I
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_NUP159_NUP214
WD40_RFWD3
WD40_like
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
7492759
NCBI-ProteinID:
XP_024440502
LinkDB
All DBs
Position
14:complement(6180305..6188302)
Genome browser
AA seq
1051 aa
AA seq
DB search
MDQVAEELVANDVHGNADLQAKGYDPLTLEPRNALGSPIMCASTRSDWAESSTTDYMDTS
RMEEKDLSRSAITLAEAEPPCSIPCSVKDSGHVVEKLTVGNYWTSHQALGRSLDSNRQHR
WQNIYQFVNGSRDKASHGDYVHEDKEKLLSRAGKQLMKMRSDLWSGLKPLSTKHFGHDSK
AISTHSRASDKRVVSSIILPNGDASLKTSSMPGFSQPPLKKVFKGKGVLCRNQEALPECG
GADAGPTDGKLDYARKVASDALVRSSSNNDKNRVDRSCPESLHEGISLREWLKPGHCRRD
KVESLLIFKQTVELVDLAHSQGVAFQDLRPSCFNLLPSNRVIYIGSSTKTEQGVPIPCAF
VKKRPLEQVAGSYCSLVPKKQRLGEETKSLQQQSRYSSSSGFGTKPMDGNNIHETGAQDS
RFVELQSQKHSNYQSSCMETRQLSFSLTLQSEEKWYRSPELLNGGPITFSSNIYNLGVLL
FELLSRFESFEENSAVMLDLRDRILPPSFLSENPREAGFCLWLLHPEPSSRPTAREILQS
ELLCRSGELSSGNNVSTTPDNDDTEPGLLHHFLSLLKEQKQKHEAKLLVDIECLEEDIKE
VEKRHLLRTPKIVSETQERCLDSREQDLYPGSVAISSSFSVSKKNEARLSRNINQIKNAY
FSMRSQIRHTSSAPPSDKDLLKNRDSLPAVQYNREDSNTNQRSDDPLGAFFEGLCKFASY
SRFEVCGSLKNGDFMSSTNVVCTLSFDRDEDYIAAAGVSKKIKVFEFGALLNDSIDIHYP
TVEMSNKSKISSVCWNNYIKNYLASTDYDGVVQMWDAGTGQIFSQYTEHQKRAWSVDFSL
ADPMMFASGSDDCSVKLWSINERSSFGTIGNPANVCCVQFSPSSTNLLVFGSADYKVYCY
DLRHTKIPWCTLAGHGKTVSYVKFLDSETLVSASTDNTLKLWDLNKTSSTGVSSSACSLT
FGGHTNEKNFVGLSALDGYIACGSETNEVYCYYRSLPMPITSHKFGCVDPVSGNEIVDGG
GQFVSSVCWRRKSNMVVAANSSGNMKVLRMV
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagttgcagaggagctggttgcaaatgatgtacatgggaatgcagaccttcaa
gcaaaaggctatgatcccttgacgctagaacctcgcaatgctttgggatcaccaataatg
tgtgcatccacgaggagtgattgggcggagagctccaccactgattatatggatacaagc
agaatggaggaaaaggacttaagtagaagtgcaataactttggcggaagctgaaccccct
tgcagtatcccttgctctgtgaaggatagtgggcatgtggttgaaaaattgacagtggga
aactattggacttcacatcaagctttaggtcgaagcctagacagtaacaggcaacacaga
tggcaaaatatatatcaattcgtaaatggatcaagagataaggcttcacatggtgattat
gtgcacgaagacaaggaaaaactgctatcaagagctggaaagcagttgatgaaaatgcgt
tctgacctgtggagtggcttgaaacctttgtcgacgaagcattttggtcatgacagcaaa
gcaatttctacacattcgagggctagtgacaagagggttgtatcaagcattatactgccc
aatggggatgcttccttgaagacctcatccatgcctggcttttctcagccaccgctgaag
aaagtctttaaaggaaagggcgttctctgcagaaaccaagaagctctccctgaatgtggg
ggtgcagatgctggccctactgatggaaaactggattatgcaaggaaagttgcttctgat
gcactagtgagatcaagttccaataacgataagaatagggttgataggtcttgtcctgaa
tccttacatgaagggatcagtttgagagagtggctgaaacctgggcattgtagaagagat
aaagttgaaagcctgctgatatttaagcaaactgtggagttggtggatttagcacactct
caaggagttgcctttcaagacttacgtccatcctgttttaatttattgccatcaaatcgg
gtcatttacattggttcttctaccaagacagaacaaggggttcctataccctgtgctttt
gttaagaaaaggccactggagcaagttgcgggttcctattgtagtttagttccaaagaag
caaagactgggtgaagaaacaaaatcacttcaacagcagtctcggtatagctctagttct
gggtttgggacaaagccaatggatggaaataatattcatgaaactggtgcacaagactct
agatttgtggaacttcagtctcagaagcattctaattaccaaagttcatgtatggaaaca
aggcaactgtctttttctttaactttacaatcggaagaaaaatggtatagaagtccagaa
ctgctgaatggaggacctatcaccttttcatcaaatatctataacctaggggtcctgctt
tttgagttgctcagcaggttcgagtcatttgaggaaaattctgcggtgatgctggatttg
cgtgatcggattctaccaccaagttttctttcagaaaatccaagggaagctggcttttgt
ctttggcttcttcatcctgaaccttcgtctcgtccaacagctagggaaatcctgcagtct
gaattactatgtcgatccggggaactgtcttccgggaacaatgtatcaacaactcctgac
aatgatgatactgaaccggggctgttgcatcattttctaagcttattgaaagaacaaaag
cagaaacatgaggcaaagttgcttgtagatattgaatgcttagaagaagatatcaaagag
gttgagaaaaggcatttattgagaacacccaaaattgtttctgagacacaagagagatgc
ctcgattcaagagaacaggacctgtatcctggttcggttgctatttctagttcgttttca
gtatcaaagaagaatgaggcaaggttgagcagaaatattaaccaaatcaagaatgcctac
ttctccatgagatctcaaatccgccatacttcttctgcccctccctctgataaagacttg
ctcaagaaccgagatagtttgcctgcagttcagtataacagagaggactcaaacacaaat
cagagatcagatgatccccttggagccttttttgaaggtctctgcaagtttgctagttat
agcaggtttgaggtgtgtggatcactcaaaaatggagattttatgagctccacaaatgta
gtttgtactttgagttttgatcgtgacgaggattatattgctgctgctggcgtatcaaag
aaaatcaaggtttttgagtttggtgcacttttaaatgactccatagatatccattatccc
acggttgagatgtcaaacaaatctaagatcagttctgtatgctggaacaattacatcaag
aactatttggcttcaactgactatgatggtgtggttcagatgtgggatgcaggcactggt
caaatattctcccaatacacagagcaccaaaagagggcttggtctgtagacttctctctg
gctgatcctatgatgtttgcgagtggcagtgatgactgttctgtgaaattatggagcatt
aatgagagaagttcttttggtaccattgggaaccctgccaacgtctgctgtgttcagttc
tctccctcctctactaatttattggtttttggatctgctgactataaggtctactgctat
gatcttcggcatactaagatcccttggtgcacattagctggccatggaaaaactgttagc
tatgtgaaatttttagattcagagacccttgtttctgcatccacagacaatactctgaag
ctttgggatctcaacaaaactagctctactggcgtgtcctctagtgcttgcagtttgacc
tttggtggtcacactaacgaaaagaattttgtaggtttgtctgcactggatggatacata
gcatgcggttcagaaaccaacgaggtttattgttattatagatctctgccaatgccaatt
acttctcacaaatttggatgtgttgatcctgtctctggaaacgagattgttgatggtggt
ggacaatttgtttcaagtgtgtgttggcgacggaaatcgaatatggttgttgccgccaac
tcaagtggaaatatgaaggtgttacggatggtgtga
DBGET
integrated database retrieval system
