Populus trichocarpa (black cottonwood): 7493390
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Entry
7493390 CDS
T01077
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 5
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
7493390
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pop04040
]
7493390
Ion channels [BR:
pop04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
7493390
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
IQ
Motif
Other DBs
NCBI-GeneID:
7493390
NCBI-ProteinID:
XP_002325129
UniProt:
B9IMD2
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Position
18:complement(12510475..12523441)
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AA seq
734 aa
AA seq
DB search
MMFDCGSKSQYLGGGQRDKFVRLDDLDSRLSSPSSAGVRSCGFGIEGFRRTGQGADTPSR
SFKRGIRKGSEGLKSIGRSLRFGVPRGVFPEDLKVSEKKIFDPQDKFLQFCNKLFLISCI
LAVSVDPLFFYLPVFSDSETCLGIDRKLATIATTLRTIVDAFYLIRMALQFRTAYIAPSS
RVFGRGELVIDPTQIAKRYMQRYFIIDLLSVLPLPQIVVWRFLLRSKGSDVLATKQALLY
IILLQYIPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGSFWYLLAVER
NDACWQKNCTAAVKCKKDFLYCGNRGMEDYRAWDSSILNSNCSADDNNQFDYGIYSNALS
SGIVSSKKFVSKYCFCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIFGLILFALLIGN
MQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEENLVQ
SLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTESTYIVREGDPVDE
MLFIIRGRLESVTTDGGRSGFFNRSLLREGDFCGEELLTWALDPKSGANLPSSTRTVKAL
REVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSL
ELRRKEEEDEAEADGNRSNMRGGGSYSIGATFLATRFAANALRGVHRNRNAKTARELVKL
QKPPEPDFTADDAD
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttgattgtggttcgaaatcgcaatatctaggtggtggtcagagagacaagttt
gtcagattggatgacttggattctaggctatcatcgccttccagtgcaggagtgagaagt
tgtgggtttggtattgaaggatttagacgtactggtcaaggagcagatacaccatcgaga
tctttcaagagaggaatcagaaaagggtccgagggactcaagtctattggtcggtcactt
agattcggggtcccacggggagtgtttccagaggatcttaaagtgtcagaaaagaagatt
tttgatcctcaagataaattcctccagttctgcaataaactgtttctcatatcatgtatt
ctggcggtttctgtggaccctctatttttttatcttccagtttttagtgattcagagacc
tgtcttggaatagatcgcaaattagcaactatagcaacaactttgcgaacaattgttgat
gctttctatcttatacgcatggctctccagttccgaacagcttacattgcaccgtcttct
cgggtatttgggcgaggtgaacttgttatagatcccacacaaatagccaagcggtacatg
cagagatatttcatcattgatttgctttctgtccttcccctaccacagattgtggtttgg
aggtttcttctgaggtcaaaaggttcagatgtcttggctacaaaacaggccttgctttac
atcatcctgcttcaatatattcctagattctttcgaatcttgcccttaacatcagaacta
aaaaggacagcaggtgtctttgccgaaacagcctgggctggagctgcatattatttgcta
ttatacatgcttgctagtcatatagttggttcgttctggtacttgttagcagtagaacga
aatgatgcatgctggcagaagaattgtactgctgctgtaaaatgcaaaaaagatttcttg
tactgtggcaatcggggtatggaagattatcgtgcctgggacagctctattcttaattca
aattgttcagcagatgataataaccaatttgattatggaatctactcaaatgctttgtct
tctggcattgtttcatctaagaagttcgtttccaagtactgtttctgtttatggtggggg
cttcagaatttgagtacacttggccaggggcttgaaaccagcacctatcctggagaggtt
atattctccatagcgctagccatttttggactcattctctttgctcttctgattggcaac
atgcagacctatcttcagtcactcactattcggttagaagaaatgagagtcaaaaggcgc
gactcagaacagtggatgcaccatcgcctacttcctcaagaccttagggaacgggtaaga
cgctatgaccagtacaaatggttggaaacacgtggggtggatgaagagaatttggtacag
agccttccaaaggatcttaggagagatatcaaacgacatctttgtttggctttggtgagg
agggttcctttatttgagaacatggatgagaggttgcttgatgccatttgcgagcggctg
aaaccatgtctatttacagagagcacatacatagttcgagaaggagatccagttgatgaa
atgctttttatcattcgtggtcgcctggagagtgtgactacagatggtgggagaagtggt
ttcttcaaccgcagtttactcagggaaggagatttttgtggggaggagcttttgacctgg
gcactggatcccaaatccggtgccaaccttccctcttctactcggacagtgaaggcacta
agagaggttgaggcctttgcactcatagctgaagagttgaaatttgtagccagtcagttc
aggcgccttcatagcagacaagttcagcacaccttccgattttattcgcagcagtggagg
acttgggctgcgtgctttattcaagctgcatggcgacgttattccaagaggaagagtctg
gagcttcgtcggaaggaagaagaggatgaagcagaggcagatggtaaccgtagcaatatg
agaggaggaggttcatatagtattggggctacctttttggcaaccaggtttgcggcaaat
gctctccgtggcgttcatcggaatcggaatgccaagactgccagggaattagtgaaacta
cagaaacccccagaacctgattttactgcagatgatgcagattga
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