Populus trichocarpa (black cottonwood): 7493399
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Entry
7493399 CDS
T01077
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 23 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7493399
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7493399
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
7493399
Peptidases and inhibitors [BR:
pop01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
7493399
Ubiquitin system [BR:
pop04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
7493399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
DUF5817
Motif
Other DBs
NCBI-GeneID:
7493399
NCBI-ProteinID:
XP_002325138
LinkDB
All DBs
Position
18:complement(12605540..12614025)
Genome browser
AA seq
949 aa
AA seq
DB search
MRTEAELKMESGGNIENGSKDDSTLKRRIKFQLATKQYIGFKNNTSDFKIETLNPGYNSR
KRPFAFEHHHPGQSVKKVDGSDFVENGLDPELCFGISFRKIGAGLENLGNTCFLNSVVQC
LTYTEPLAAYLQSGKHQNSCHVAGFCALCAIQKHVSRALQSSGRSLVPKDLVSNLRCISR
NFRNARQEDAHEYMVNLLESMHKCCLPSGVPSESPAAYEKSLVHKIFGGHLRSQVECQQC
SYCSNKFDPFLDLSLEIAKADTLPVALRNFTAAEVLDGGEKQYQCQRCKQKVRAKKRLTV
HKAPHVLTIHLKRFHAHDPGRKVDKKVIFDRSLDIKPFVSGSYEGELKYSLYGVLVHYGH
NTHSGHYVCFVRTSSNMWHLLNDNQVRQVSEKTVLEQKAYMLFYVRDRKNVARKPFDVAQ
KESMKANLGSNFANLVAKQFSKEHVDSGLIGNRLESTNSSAAVNKKDASSIVPSSEIYPK
DAPFQQNNRQKLLKVHPALETSSAPLTFPSKGAYLANSELRECLPPSTPSMNSNNVTPKP
EETSTITEAKTSDCNVPSNSSSCLKNSAIDKLVRNEIPQKINAGLNVGVSSQVPCWDFCD
KTSGEVPRLAPSAGSTDQTFDKTVTVKSPNKPSCESDQGGDIPIKSSAGKTPSDKAVEGG
QQTARQPVEASILIASIPPVMQNECLHSKAPACTPKKKLEKKLLKRRMHLGSNLFRVSLG
VHMRKKHKKRKCLALETNNLFKENLLEQLENDGCSSRLGPSTSKISTGLLASMTSRRKTA
KSGSRKGNDTRKSSDPGMGVIHGESMERNSVSGTLLTMDKQRQKSSISISEVNGGDAREP
DCTENSKRDASQNGIMNALSGGAKVTVAPWDGIELPPQIVESNGVENLSIGYVANEWDEE
YDRGKRKKLRQSQHNFDGPNLFQALATKNTQVKKAKMDRSRSENQPFRI
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgaagcggagctgaaaatggaatccggtgggaacattgaaaacggatccaag
gacgattctactttgaaacgaaggataaagtttcagctggcgactaaacagtacattggg
tttaagaacaacacttctgatttcaagattgaaactttaaatcctggttataattcgaga
aagaggcccttcgcttttgagcatcaccatccgggtcagtccgtgaagaaagttgacggg
tcggattttgtggaaaatgggcttgatccagagctttgttttgggatctctttcaggaaa
attggtgctggtcttgagaatcttgggaacacttgttttctcaattcagtggtgcaatgt
ctgacatacactgagcctttagcagcatacttgcaaagtggcaagcatcaaaattcatgt
catgtagctggattttgtgccttgtgtgctatccaaaaacatgtgagccgtgctctacaa
tcaagtgggaggtcactagtgcccaaggatcttgtctcaaatttgcgctgcatatctagg
aacttccgcaacgcaagacaagaggatgcacatgagtatatggttaacttgctggaatca
atgcataaatgctgcttaccttcaggagtgccaagtgaatcccctgccgcttatgagaag
agtttggtacacaaaatctttggtggtcaccttcgtagtcaggtggaatgccaacaatgt
tcttactgctccaacaaatttgatccatttttagatttaagcctcgaaatagccaaagca
gataccttgccagttgcacttcggaatttcactgctgcagaggtgttagatggaggagag
aagcaataccagtgtcagcgatgcaagcagaaagtcagggctaagaaaaggcttacagtt
cacaaggcaccacatgtgcttacaatacatctaaaacggtttcatgcacatgatcctgga
cgtaaggttgacaagaaagttatatttgatcgttcattggacattaagcctttcgtcagt
ggttcctatgagggggagttaaagtacagtctatatggtgtactcgtacattatggtcat
aatactcactctggtcattatgtctgttttgttcggacatcaagtaatatgtggcacctc
ctcaatgacaatcaggttcgtcaagttagcgagaagactgttttagagcagaaggcttat
atgctgttctacgttcgtgatagaaaaaatgttgcaagaaaaccttttgatgttgctcaa
aaagaaagcatgaaagcaaacttgggtagtaactttgcgaatctggttgccaagcaattc
tcgaaggaacacgtggatagtggtttgattgggaatagattggagtctaccaactcttct
gctgctgtgaataaaaaagatgcatcaagcattgttccatcatcagagatctatccaaaa
gacgcaccatttcagcaaaacaataggcaaaaattgctgaaagtgcatcctgccttagaa
acttcaagtgcaccattgacattcccatcaaaaggagcgtatttggcaaattcggagctt
agagaatgcttgccaccttcaactccctccatgaacagcaataatgttactcctaaacct
gaagagacttctactattactgaggccaaaaccagtgactgtaatgtgccatctaatagc
agcagttgcctgaaaaactctgctatcgacaaacttgtcagaaatgagatcccacaaaag
attaatgctggcctaaatgtgggggtgtcaagtcaagttccatgttgggatttttgtgat
aaaacatcaggtgaggtcccaagattggctccatccgcgggatctactgaccagacattt
gacaaaacagtcactgtgaaatcacctaacaagccaagctgtgaaagcgatcagggtgga
gacatccccattaagagttctgctgggaaaacacctagtgataaggctgttgaaggtggg
caacaaactgcacgccagccggttgaggcatcaatcctgattgcttcaatcccacctgtc
atgcaaaatgaatgtttacatagcaaagctcctgcttgcacacctaaaaagaaattagaa
aagaagcttctcaagcgtaggatgcatcttggctcaaacttattcagggtatccttaggt
gttcacatgaggaaaaaacacaaaaagagaaaatgccttgctttggagaccaataatctc
ttcaaagaaaacttgctggagcagctggagaatgatggctgttcatcccggttggggcca
tctacatccaaaatctctacaggtttattggcttcgatgacatctcggaggaagacagct
aaatctggttcaagaaagggaaatgatacaagaaagtccagtgatcctgggatgggtgtc
atacatggagaatctatggagagaaatagtgtgagtggcaccttgcttacaatggataaa
cagagacaaaagagttctatctcaatctctgaagtaaatggaggagatgcaagagaacct
gactgcacagaaaatagcaaaagagatgcatcacagaatgggataatgaatgcccttagt
gggggtgcaaaggtgactgttgcaccatgggatggaatagagttgccacctcagattgtg
gaatccaacggtgtggaaaatctcagcattggttatgtagcaaatgagtgggatgaagaa
tatgatcgaggtaagagaaagaagctaaggcaatctcagcacaactttgacgggcccaac
cttttccaagcattggctacaaagaacactcaagttaagaaggcgaagatggaccgatct
aggtctgaaaaccagcctttcaggatatga
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