Populus trichocarpa (black cottonwood): 7493488
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Entry
7493488 CDS
T01077
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase component HRD3A
KO
K14026
SEL1 protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7493488
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Motif
Pfam:
Sel1
TPR_2
TPR_CcmH_CycH
TPR_12
TPR_6
Motif
Other DBs
NCBI-GeneID:
7493488
NCBI-ProteinID:
XP_002317869
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Position
12:4231648..4236628
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AA seq
682 aa
AA seq
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MQRHKLTLSLLIFSLLPLSLHARQYFLILSQEDLKDIPSSPTTTSSDVDPNESPPEWDEF
GDSDSKPEHELDPGSWRPIFEPDATTSSTSASKLDPEMEQYYSAVEKMFSAVSDSEVKVV
EEAVAEIEELATVKGNSHAQSVLGFLYGLGQIKERDKAKAFLYHHFAADGGSLQSKSALA
YTYYRQQMYENAVKLYAELAEVAVNSFLISKDSPVIEPVRIHNGAEENKEALRKSRGEDD
DVFQILEYQAQKGNAGAMFKIGYFHYFGLRGLRRDHAKALAWFSKAVEKGEPRSMELLGE
IYARGAGVERNYTKALEWLTLAAQQQLYSAYNGMGYLYVKGYGVQKKNYSKAKEYFERAA
DHEDAGGHYNLGVMHLKGIGVKRDVRLACQYFIVAANAGQPKAFYQLAKMFHMGVGLKKN
LLMATALYKLVAERGPWNSLSRWALESYLKGDVGKAFLLYSRMAELGYEIAQSNAAWILD
KYAEGSMCMGESGFCTDSERHQRAHFLWWQASEQGNEHAALLIGDAYYYGRGTERDYERA
AEAYMHAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDQALEIDPAAKLPVTLALAS
LWIRKNYADSFMVHVIDSLPGVYPKIKAWVENIILEEGNAAILTLFVCLLTVLYFRERQR
RNAAVEVGIQGQHIHHAPAALN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcagagacacaaactcacactctctcttctaattttctctctcctcccactctctctc
cacgcccgccagtactttctcatcctctctcaagaagacctcaaagacatcccttcctcc
ccaaccactacctcctccgatgtggaccccaatgagtctccacccgagtgggacgagttc
ggcgactctgactccaaacccgaacacgaactcgaccctggctcctggcgcccgatcttc
gaacccgacgccaccacatcctccacctctgcatcgaaactcgatccggagatggagcag
tactactccgccgtggagaagatgttttcggctgtgagtgacagtgaggttaaggttgtg
gaggaagcagtggcggaaattgaggaattggcgacggtgaaggggaattcccatgcccaa
tcggttttagggtttttgtatggattagggcaaattaaagagagggataaagctaaggct
tttttgtatcatcactttgcagccgatggaggcagtttgcagtctaaatcagctcttgcc
tacacgtattaccggcagcagatgtatgaaaatgcggttaaattatatgcggaattagca
gaagtagcagtaaatagttttttgatttcgaaggattccccggtgattgaaccggttagg
atacataatggggccgaggagaataaagaggctttgaggaaatcacgaggggaggatgac
gatgtgttccagattttggaatatcaagctcaaaaggggaatgcgggagcaatgtttaaa
attgggtattttcactactttggattgagaggattgaggcgtgatcatgccaaagctttg
gcatggttttcaaaggctgtagagaaaggggaacccaggtcaatggaacttcttggtgaa
atatatgcccggggagctggagttgagaggaactatactaaagcgcttgaatggcttaca
cttgctgcacaacagcagctttattcggcttataatggcatggggtatttgtatgtcaag
ggttatggagtgcaaaagaagaactacagtaaagcaaaagaatactttgagagggctgct
gaccatgaagatgctggtgggcactataaccttggagtaatgcatcttaaagggattgga
gtaaagagagatgtacgtttggcatgccagtattttatagtagctgctaacgcaggtcaa
ccaaaggcattttaccagctggcaaagatgtttcatatgggggtggggcttaaaaagaat
cttcttatggctactgcattatacaaactagtagcagaacggggcccgtggaactccttg
tctagatgggcattggagtcatacctaaaaggtgatgtgggcaaagcattcctgttgtat
tcaaggatggctgagctgggctatgaaattgcacaaagtaatgctgcatggattcttgac
aaatatgcagagggtagcatgtgtatgggggaatctgggttttgtacagactcggaaaga
caccagcgtgcccattttttgtggtggcaagcttcagaacagggcaatgaacatgctgct
ttgcttattggcgatgcgtattactatggtaggggtactgagagggattatgaacgagcg
gcagaggcttacatgcatgccaaatcgcaatctaatgcgcaagctatgttcaatcttggt
tacatgcatgaacatggtcaaggacttccactcgaccttcatcttgctaagcgttactat
gaccaagctcttgagatcgatcctgcagcaaagttacctgtcacactagccctcgcaagc
ttgtggataagaaagaactatgcagacagtttcatggtacatgtaattgattcattgcct
ggagtctatccaaaaatcaaagcatgggtggagaatattatcctggaagaaggaaacgca
gcaatacttactctttttgtctgtctgcttacggttctctattttcgtgaacggcaacga
aggaatgctgctgttgaggttggcatacaaggccaacatatccatcatgcacctgctgcg
ctcaattag
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