Populus trichocarpa (black cottonwood): 7493542
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Entry
7493542 CDS
T01077
Name
(RefSeq) geranylgeranyl pyrophosphate synthase, chloroplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00900
Terpenoid backbone biosynthesis
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
7493542
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pop01006
]
7493542
Enzymes [BR:
pop01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
7493542
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
7493542
2.5.1.29 geranylgeranyl diphosphate synthase
7493542
Prenyltransferases [BR:
pop01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
7493542
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
7493542
NCBI-ProteinID:
XP_002305196
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All DBs
Position
4:complement(7720041..7721478)
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AA seq
365 aa
AA seq
DB search
MAFSSTISFYDNSLLLKKPINGLINNQPRTPLGHLKFVPLKIQATYVASPSFKQSFQSQE
VGNKSQKVPLPAFEFKEYMINKANQVNKALDEAVPLQHPQKINEAMRYSLLAGGKRVRPI
LCIASCELVGGDEGLAMPAACALEMIHTMSLIHDDLPCMDNDDLRRGKPTSHKIFGEDTA
VLAGDALLSLAFEHVARNTKNVSSDRVVQAIAELGSTVGSKGLVAGQIVDIDSEGKEVSL
STLEYIHVHKTAKLLEAAVVCGAIMGGADATSVERLRKYARSIGLLFQVVDDILDVTKSS
EELGKTAGKDLASDKATYPKLMGIDEAKKFAAQLVDEANQGLAFFDHVKAAPLYHFANYI
ATRQN
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atggccttctcttcaacaatctctttctatgacaattcgcttctcctcaaaaaacccatc
aatggccttataaacaaccagccaagaaccccattaggccacctcaaatttgtgcccttg
aaaattcaagccacctatgttgcaagcccatctttcaaacagtcatttcaatcccaagaa
gtgggcaacaagtcacagaaggtccctttgccagcattcgaatttaaggagtacatgatc
aacaaggcaaatcaagtgaacaaagcactagatgaggcagtacccttgcaacatccccag
aaaatcaatgaagccatgagatattctctgctcgcgggtggaaagcgtgtacgtccaatt
ttatgcattgcttcgtgtgaattagtgggaggagatgaggggttagcaatgccagcggct
tgtgcactggagatgatccacaccatgtcattaatccatgatgatcttccctgtatggac
aacgatgatctccgacgaggtaagcccacaagtcataaaatattcggcgaagatactgca
gttcttgctggcgatgcactcctatcacttgcctttgagcacgtagctaggaacaccaag
aatgtttcatcggaccgtgtggtccaagccattgctgagcttggatcaacagttggatca
aaaggtcttgtggcaggtcagattgtggacattgacagtgaaggtaaagaagtgagtttg
agcacattggagtatattcatgtccataaaacagcaaagctcttagaggcagcggttgtt
tgtggggcgataatgggaggtgcagatgctacaagtgtcgaaagacttaggaaatatgct
aggtctatcgggttgctgtttcaggtggtggatgatatactggatgtgaccaagtcctca
gaggaactggggaagacagccggaaaggatctggcgagtgacaaggcgacctaccccaag
ctgatgggcatagacgaggccaagaaatttgctgcccaattggtcgatgaagccaatcaa
ggtcttgctttcttcgatcatgtcaaggctgccccattataccattttgctaactatatt
gctactcgacaaaattaa
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