Populus trichocarpa (black cottonwood): 7493571
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Entry
7493571 CDS
T01077
Name
(RefSeq) plant-specific TFIIB-related protein PTF2
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7493571
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
7493571
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRF2-like_C_cyclin_rpt
Zn_Ribbon_TF
TFIIB
HTH_AsnC-type
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
7493571
NCBI-ProteinID:
XP_024455359
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Position
4:complement(7008546..7015017)
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AA seq
529 aa
AA seq
DB search
MSCKACGLRTLIRDDATENMICDSCGTVQDFANYQERTFNINGPTGVFISIGSSGCGSVL
NYREKKIYEANNLIDDIVFKVGLTGGSKVSEIRDMISKVTDGEFGSSESRWFSIFVGACV
YVVMRNGDKSLSIEEVSSVVGCDIHELGRMVVRVVEHLGMKLPGFDIVGSFERVVRSLSI
SDRVEGDVLERMRKQGIFLVQCAVKWFLTTGRRPLPVVVAVLALVAELNGVEGVKIEEVA
REVHVAVSTCRLRYKELLEVIAKVAQEILPWGKDVNVKNAVKNAPFVIRYLEMKCMSKSG
GEKKGLESTEFDLGEVVGEYFSKNVVEDSLECDDLRYFELEDAIGFDKTGIDEADKLQLS
HECLSMVYDKFLMDGGCGRYMEESGKVLGRKRERELEIQATEWWNGKSELSKKLLLKQLL
EKDIGFSVMPPSFVNGCTTIKKRRAKINAAKLRIDRIMNPWNTDSGSGKVCTVEGAHDRK
RKRKSLVKDIDWEDFVIETLLLHQVKEEEIEKGYYNTLMDLHVFNSGTM
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgcaaagcttgtgggctcagaacccttatcagggacgatgcaacagagaacatg
atatgtgattcatgtggtacagtccaggatttcgccaactatcaagaacgtacctttaac
attaatgggccaacaggtgtgtttataagtataggctcttcaggttgtggtagtgttttg
aattatagagagaagaagatttatgaagcaaataatttaatagatgatattgtttttaag
gtagggttaactggtggttcaaaagtaagtgaaattagagatatgattagtaaagttact
gatggggagtttggttcaagtgagagtagatggtttagtatttttgttggtgcttgtgtt
tatgttgtaatgaggaatggtgataaaagcttgagcattgaggaggtgagtagtgttgtt
gggtgtgatattcatgaattggggaggatggtcgtgagggttgttgagcatttggggatg
aagttgccaggttttgatatagtgggcagttttgagagggtggttaggagtttgtcgatt
tcggacagggttgagggggatgtgttggagaggatgaggaaacaaggtatttttttagtg
caatgtgctgtgaagtggtttttgactacagggaggaggccgttgccggttgttgtggct
gttttggctttggttgctgagttgaatggggtggagggggttaagatcgaggaggttgcc
agagaggttcatgtagcggtgtctacttgtaggttgagatacaaggaattgttggaggtg
attgctaaggtagcgcaagagattttgccatgggggaaggatgtaaatgtgaagaatgca
gtgaagaatgcgccatttgtgattcgatatttggagatgaaatgtatgtcgaagagtggt
ggggaaaaaaagggtttggagagtactgagtttgatttgggagaagtggttggtgagtat
tttagtaagaatgttgtggaggatagtttggaatgtgacgatttgcggtattttgagttg
gaagatgctattgggtttgataagactggcattgatgaggcggataagcttcagctttca
catgaatgcttatccatggtttatgacaagttcctgatggatggtggttgtggtagatat
atggaagaaagtggaaaggttcttgggaggaaaagggagagagagcttgagattcaggca
acagaatggtggaatggaaaatcagagttgagcaagaagcttttgctaaaacagttattg
gagaaagatataggatttagtgttatgcctccatcttttgtcaatggttgtacaacaatt
aagaagaggagagcaaagataaatgctgcaaagctgcggattgataggattatgaatcca
tggaatactgattcaggtagtggtaaagtttgcactgttgaaggtgcacatgatcggaag
aggaaaagaaaatcactggtaaaagatattgattgggaggattttgtcattgagaccctc
cttcttcatcaggtgaaagaggaggaaattgagaaagggtattacaacaccttgatggac
ttgcatgttttcaattctggtactatgtga
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