Populus trichocarpa (black cottonwood): 7493908 Help Entry 7493908           CDS       T01077                                  Name (RefSeq) protein TORMOZ EMBRYO DEFECTIVE   KO K14555   U3 small nucleolar RNA-associated protein 13 Organism pop  Populus trichocarpa (black cottonwood) Pathway pop03008   Ribosome biogenesis in eukaryotes Brite KEGG Orthology (KO) [BR:pop00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     7493908  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:pop03009]     7493908 Ribosome biogenesis [BR:pop03009]  Eukaryotic type   90S particles    U3 small nucleolar RNA-associated proteins     7493908 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Utp13 Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_SPT8 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_DCAF12 Beta-prop_Nup120_160 WD_LRWD1 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_NWD2_C Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_LRRK2 Cytochrom_D1 WD40_like Beta-prop_NOL10_N PROPPIN Motif Other DBs NCBI-GeneID:  7493908 NCBI-ProteinID:  XP_024439747 LinkDB All DBs Position 13:6830689..6840146 Genome browser AA seq 868 aa AA seqDB search MSSLQIKKNYRCVPSLQQFYSGGPFAVSSDGSFIACANGDAIKILDSSNASIKASIEVDT DSGLTALALDPNDRFLFSAGHSRLIRVWDLSTFKCIRSWKGHDGPVMSMACHASGGLLAT AGADRKVLVWDVDGGFCTHYFKGHKDVVTSIMFHPDTNKTLLFSGSADATVRVWDLLAKK CIATLERHFSALTSMAVSEDGWTLLTAGRDKVVNLWDLHDYVCKMTIPTYEVLEGLCVVK SGTELASFLGSCNQQSGKRRDRSSPIYFVTVGERGIVRIWDSECGVSLYEQKSSDVAVSS DTDDSLRGFTAAVILPLDQGLLCVTVDHHFLFYSLLGHPEEKFKLILNKRLVGYNEEILD MRFLGEEEKFLAVATNLEQVQVYDMESMSCSYVLAGHTEIVLCLDTCVSSSGRPLLATGS KDNSVRLWNSESRNCIGVGTGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWSLDGISDDA DQPINLKAKAVVAAHDKDINSLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRG IWSVEFSPVDQCVITASGDKTIKMWAIADGSCLKTFEGHTSSVLRASFLTRGSQFVSCGA DGLVKLWTVKTNECTATYDQHEDKVWALAIGKKTEMFATGGGDAVVNLWYDSTASDKEEA FRKEEEGVLRGQELENAVLDADYIKAIQIAFELHRPNKLFELFAELCRKKEGSSQIEKAL HVLGKEEIHQLFQYVREWNTKPKLCHVAQYVLFGVFNILPPTEILEIKGIGELLEGLIPY SQRHLSRIDRLLRSTFLLDYTLHGMSVIEPDTNATEMKDADQEQELTSELLKEKAPSKKR KSNKSKDSSSKKVKGAAYTSVAPMSLKA NT seq 2607 nt NT seq  +upstreamnt  +downstreamnt atgtcgtcattacaaataaagaaaaactacaggtgcgtcccgtctctgcagcaattctac agcggaggcccttttgctgtctcttctgacggttccttcattgcttgcgcgaacggggac gctatcaagattttggattcttccaacgcatcaataaaagccagcatagaggttgataca gattctggtctaaccgccttagctcttgaccccaatgatagatttcttttttctgccggg cacagcaggcttataagggtctgggacttgtccactttcaaatgcatccgctcttggaag ggccatgatggtcctgtgatgtccatggcttgccatgcttctggagggttgcttgcaact gcaggagctgataggaaagtacttgtttgggatgttgatggtggcttctgtactcattac tttaaagggcataaagacgttgtgactagcattatgttccatcctgataccaataaaact ctgcttttctcaggaagtgctgatgctactgtacgagtttgggatcttctagcaaagaag tgtatcgcaacattagaaaggcatttctcagcacttacgtctatggcagtgtctgaagat ggatggacattgcttactgctggaagagataaggttgtaaacttgtgggaccttcatgac tatgtatgcaagatgactattccaacttatgaagtgctggaaggtttgtgtgtagttaaa tcagggactgagttagcttcatttctgggttcatgcaatcagcaaagtgggaagaggaga gacaggtcatcaccaatttattttgtcacagttggtgaacgtgggattgtacgaatatgg gattctgaatgtggggttagcttgtatgaacagaagtcctcagatgttgctgtctcctct gacacagatgattctctgagaggcttcactgctgctgttatccttccattagatcaaggt ttactttgtgtgaccgttgatcatcactttctgttctactctctacttggacaccctgaa gagaaattcaagttaattctgaacaagaggcttgttgggtataatgaagagattcttgac atgaggtttctgggagaggaggaaaagtttcttgctgttgctacaaatcttgaacaggtt caagtgtatgacatggaatctatgtcatgctcctatgtattggcaggtcatactgaaatt gttttatgccttgacacctgtgtatcaagctctggaaggccacttcttgcaacaggaagt aaggacaacagtgtaaggttgtggaattcagagagcagaaattgcattggtgttggcaca ggtcacatgggaggtgttggagctgttgcattttcaaagaagtggaagaatttctttgtt agtggtagcagtgatcgtaccatcaaggtgtggagtttagatggtatctcagatgatgca gaccagcctataaatttgaaagcaaaagctgtggtggcagcacatgacaaggatataaat tcgctggctattgcaccaaatgatagtttggtttgtagcggttcacaagaccggactgct tgtgtgtggaggctgccagatctggtatctgtagttgtacttaaagggcataaaagagga atatggtcagtagagttttctccagttgatcaatgtgttataacagcatctggtgataaa acaataaagatgtgggctatagctgatgggtcatgcttgaaaacatttgaagggcacaca tcaagtgttttaagagcatcatttcttactcgtggaagtcaatttgtttcgtgcggtgct gatggtttggtaaagctatggacagtcaaaacaaatgaatgcactgctacatatgatcaa catgaggacaaggtttgggccttggcaatcggaaaaaagacagaaatgtttgcaactggc ggtggtgatgctgttgttaatctgtggtatgattcaactgcttcagataaagaggaagct ttccgaaaagaagaggaaggggtattgagaggtcaagaattggaaaatgctgtgttagat gctgactacattaaagctatccaaatagcatttgaacttcacaggcctaataaacttttt gagttgtttgctgaactttgcaggaagaaggaaggtagcagtcagatagagaaagccctc catgttcttggcaaggaagaaattcatcaactttttcaatatgttcgtgaatggaataca aagccaaagttgtgtcatgttgcacaatatgtgttgtttggagttttcaacatccttcct ccaacagagattcttgagataaaaggcatcggggaacttcttgaaggtcttatcccatat tcccaaaggcatttaagcaggatagacagacttttgaggagcacatttttgctcgactac accctacatggaatgtcagttattgaaccagatactaatgcaacagaaatgaaagatgct gatcaggagcaagagctgacttcagaattgttgaaagagaaggctccctcaaagaaacgg aaatcaaacaaatctaaagatagttcaagtaagaaagtcaagggtgctgcttacacaagc gttgctccaatgtccttgaaggcatag

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