Populus trichocarpa (black cottonwood): 7494232
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Entry
7494232 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7494232
KO
K13091
RNA-binding protein 23/39
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7494232
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
General mRNP proteins
7494232
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
7494232
NCBI-ProteinID:
XP_002312948
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Position
9:complement(11035107..11043759)
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AA seq
599 aa
AA seq
DB search
MEFDEYDYLEKTVENPEPPKVRETANGEGDIVKSREKDRPRSSKRRSDDKDDGDDERRRS
KQSRSGDENRDRERSKERGLSHHRSQSRDGERDRHRSSREHRDRDRGKDRDREERNGKER
DRDRDRREHDRDGEREREREKETERERSRRSRSRSERHRSDQDEKDREKSRERELREKER
EKEREKERESRERDRESRRYKERKEEATEPEADPERDQRTVFAYQICLKADERDVYEFFS
RAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNL
VQSTTAVASGGLIGPYTGGARRLYIGNLHFNITEDQLRQVFEPFGAVELVQLPHDEGGHC
KGFGFVQFARLEDARNALNLNGQVEIAGRPIKVSAVTDQAGAQDGGTNVGDFDDDEGGGL
ALNARSRALLMQKLDRTGTASSITGSLGTPTLPTAPILGAAPAVSPAIAPLLSGSVLAIP
GLPVAGLQLPATTIPTVETIGVPSDCILLKNMFDPKKETEPDFDLDIKEDVQEECSRFGN
VKHIHVDKNSAGFVYMRFENMQGAVNAQRALHGRWFAGKMITATFMVPQTYEAKFPDST
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgatgaatatgactacttagagaaaacagttgagaatccggaaccaccaaag
gtgagggaaactgctaatggtgagggtgatattgtgaaatccagggaaaaggatcgaccg
cggagttcaaagcgtaggagtgatgataaggatgatggtgatgatgaacgaagacgttcg
aagcaatctagatctggagatgagaatagggaccgtgaacggagtaaagaaaggggtttg
tcccatcatcggtcacaatctagagatggagagagggatcggcacaggagtagcagggaa
cacagggatagggacagaggcaaggatagagacagggaagagagaaatgggaaagaaagg
gatcgtgatcgagataggagggaacatgaccgtgatggtgaaagggagagggagagagag
aaggagacggaaagagagcggtcgcgtcgaagcaggagtagatcagaaaggcatagaagt
gatcaggatgaaaaggatagagagaagagccgggagagggagcttagagaaaaggaaaga
gaaaaggaaagagaaaaggagagggagtcaagggaacgggacagagaaagcagaagatat
aaagaaaggaaggaagaagcgacagagcctgaggctgatcctgagagagaccagaggaca
gtatttgcctatcagatatgtttgaaggcggatgaaagagatgtctatgaatttttctca
agggctggcaaggtgcgagatgtacgactcatcatggatcgcaattcaagacgatcaaaa
ggagttggctatatcgagttctatgatgcgatgtccgtgcctatggcgatagcactctct
ggacagccccttcttggtcaaccagtgatggtgaaaccttctgaagctgaaaagaatctt
gttcagtcaactacagctgtggcatcgggtgggcttataggcccctacacaggaggggct
agaaggttgtatatcggcaacctgcacttcaacataaccgaagatcaacttcgtcaggtg
tttgagccatttggtgctgtggaattggtgcaattgcctcacgatgaaggtgggcattgt
aaaggctttggttttgtccagtttgcacgtcttgaagatgctagaaatgcactaaacttg
aatggacaagtggagattgcaggaaggccaatcaaggtgtcagctgttactgatcaagct
ggagcacaagatggtgggacaaatgttggtgattttgatgatgatgaaggtggtggcttg
gcactgaatgcacgttctcgggcacttttgatgcagaagttagatcgcactggcactgcc
tcaagtattactggttcactaggcacccctactctaccaacagcacccatccttggggct
gcacccgccgtgtctcctgctattgctcctcttttatcaggttctgttctggctatacct
ggacttccagttgcaggtcttcaacttcctgctactacaattccaaccgtggagacaatt
ggagtcccaagtgattgcatactcttgaaaaacatgtttgatccaaaaaaagagactgaa
ccagattttgatttggatattaaagaagatgttcaagaggaatgctcaaggtttggaaat
gtgaagcatatacatgtcgacaagaacagtgccggttttgtttacatgcgttttgagaac
atgcaaggtgctgtaaatgcacagcgagctctccatggaagatggtttgctgggaagatg
atcactgcaacattcatggttccccagacctacgaggccaagtttcctgacagcacatag
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