Populus trichocarpa (black cottonwood): 7494244
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Entry
7494244 CDS
T01077
Name
(RefSeq) WD-40 repeat-containing protein MSI2
KO
K10752
histone-binding protein RBBP4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7494244
03083 Polycomb repressive complex
7494244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7494244
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
7494244
Histone modification proteins
HAT complexes
HATB complex
7494244
HDAC complexes
Sin3A-HDAC complex
7494244
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
7494244
PRC2.2
7494244
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
7494244
Heterochromatin formation proteins
Other heterochromatin formation proteins
7494244
Chromatin remodeling factors
NuRD complex
7494244
NuRF complex
7494244
NuRF complex (fruit fly)
7494244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
WD_LRWD1
Beta-prop_EML
MIOS_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_NUP159_NUP214
Beta-prop_RIG_1st
Beta-prop_DCAF4
DUF6922
Motif
Other DBs
NCBI-GeneID:
7494244
NCBI-ProteinID:
XP_024463944
LinkDB
All DBs
Position
9:complement(10928044..10931688)
Genome browser
AA seq
418 aa
AA seq
DB search
MAPVEDDQDVGQDQLDEEFSVWKKNTPFLYDFVISHPLEWPSLTVQWVPLATPLPHSTDP
SSFSVHKLVLGTHTSDDFPNYLLIADAVLPTSVAEAKIDASGSSTNSVIPKVEITQKIRV
DGEVNRARSMPQNPAIVGAKTSGCEVYVFDSTKQAERKQRDGCDPDLRLTGHDKEGYGLS
WSPFKQGYLVSGSHDNRICLWDVSAVAQDKVLGALQVYEAHESVVEDVSWHLKNENLFGS
VGDDCQLIIWDLRTNQIQHSVKAHEKEINYLSFNPYNEWILATASSDATVGLFDMRKLTV
PLHALRSNTEEVFQVEWDPNHETVLASSADDRRLNVWDLNRIGEEQLELDADDGPPELLF
SHGGHKAKISDFSWNKNEPWVISSVADDNTLQVWQMAESIYRDEDDIASAEEPPLAEK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcaccggtggaggatgatcaggatgtgggacaagatcaacttgatgaagaattctct
gtatggaagaagaacacgccatttctctatgacttcgtcatctctcaccctctcgagtgg
ccatctctaaccgtccaatgggtaccactcgcaactccactgcctcactcaaccgacccg
tcgtctttctccgttcacaagctggttcttgggactcacacttctgatgatttccccaac
tatctcttgattgctgatgctgtgctgcccacttcggtcgccgaagccaagattgacgct
agtggcagttctacgaattctgtgattcctaaggtggaaattacacagaagattcgtgtt
gatggagaggtgaacagggcacgaagtatgccacaaaatcctgctattgttggtgcaaag
actagtggttgcgaggtttatgtgtttgattctaccaaacaggcagagaggaaacaaagg
gatggctgtgatccggatttaaggttaactggccatgataaagaagggtatggattgtcg
tggagtccatttaagcagggttatcttgtgagtggttcacatgataatagaatatgtttg
tgggatgtgtctgccgttgctcaagataaagtgcttggtgcgttgcaagtttatgaggcc
catgaaagtgtggttgaagatgtgtcatggcacttgaagaatgaaaatttgtttggttct
gtgggggatgattgtcaattaattatctgggacttgcgcacaaatcaaatccaacattct
gttaaagctcatgagaaagagattaactatctatcgttcaatccatacaatgaatggatt
ctggccacagcttcttctgatgcaactgttggtctgtttgatatgcggaagctgactgta
ccactgcatgctttacgtagtaacacagaagaggtattccaagtagaatgggatcctaat
catgaaacagtgctagcatcctctgctgatgacagaaggttgaacgtttgggatctgaac
aggattggtgaggagcagttagagttagatgctgacgacggcccaccagaacttcttttc
tctcacggaggtcacaaggccaagatatcagatttttcatggaataaaaatgaaccatgg
gtcatctcaagcgtggctgatgacaacacacttcaagtgtggcaaatggctgaaagtatc
tatcgtgatgaagatgacatagcatctgctgaggagccacctctagctgagaaatga
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