Populus trichocarpa (black cottonwood): 7494297
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Entry
7494297 CDS
T01077
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
7494297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7494297
03019 Messenger RNA biogenesis [BR:
pop03019
]
7494297
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
7494297
RNA polymerase I system
7494297
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
7494297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
Spt5-NGN
KOW
KOW6_SPT51-2
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
7494297
NCBI-ProteinID:
XP_024464438
LinkDB
All DBs
Position
9:10349711..10357769
Genome browser
AA seq
1047 aa
AA seq
DB search
MARRRDEDDDLEDEEYEEQEEQLMDEEEEYEEEEEEDRGAAIKKRRRSDFIDDIAEEEDE
EEEDDDDDEDYGGGGGGGGGGGRKQKGKKRRGSEFFDDIAQVASDDDEEEEDAEDDFIVD
DHGADLPDEASGRRMHRPLLSREDDQEDVEALERSIQARYAKSMHSEYDEETTEVEQQAL
LPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVVALDHLKNYIYIEADKEA
HVREACKGLRNIFGQKIMLVPIREMTDVLSVESKVIDLSRDTWVRMKIGTYKGDLAKVVD
VDNVRQRVTVKLIPRIDLQALANKLEGREAPKKKAFVPPPRFMNVDEARELHIRVERRRD
PMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIKPSFDELEKFRSPGENGDGDVASLST
LFANRKKGHFMKGDAVIVVKGDLKSLKGWVEKVDEENVHIRPEMKGLPKTLAVNEKELCK
YFEPGNHVKVVSGTHEGVTGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTK
IGDYELHDLVLLDNMSFGLIIRVESEAFQVLKGVTERAEVALVRLREIKCKIEKKTNVQD
RYKNTVSVKDVVRIIDGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGYICAKSHSCIVIGG
SRSNGDRNGDSYSRLGSFKTPRVPPSPRRFPRGGPPFDSGGRNRGGRGGHDALVGTTIKV
RQGPFKGYRGRVVDIKGQFVRVELESQMKVVTVDRSHISDNVVVSTPYRDAPRYGMGSET
PMHPSRTPLRPYMTPMRDSGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWGT
SPQYQPGSPPSGTYEAPTPGSGWASTPGGNYSEAGTPRDSSSAYANAPSPYLPSTPGGQP
MTPSSASYLPGTPGGQLMTPGTNGLDMMSPVIGGDGEGPWFIPDILVTVHRTADESAVGV
IREVLQDGSCKIVLGAHGNGETITALPSEIEMVVPRKSDKIKILGGAHRGATGKLIGVDG
TDGIVKLEDTLDVKILDMVILAKLAQM
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtcgaagagacgaagacgacgaccttgaagatgaagagtacgaggagcaggaa
gagcaactgatggatgaagaagaggagtatgaagaggaagaagaagaggatagaggagcg
gcgattaagaagagacggagatcagatttcattgatgatatcgcggaggaggaggatgag
gaagaagaagatgatgacgatgatgaggattatggtggtggaggtggtggtggaggtgga
ggtggtaggaagcagaaggggaagaagcggcgtggttctgagttttttgatgatattgcg
caagttgccagtgatgacgacgaagaagaagaagatgccgaggatgattttatagttgat
gatcatggagctgatttacctgatgaggctagtggtagaaggatgcatcggccattgctg
tcgcgtgaggatgatcaagaagatgttgaagcgcttgagagaagtatccaagctagatat
gcaaagtcaatgcactcggaatatgatgaagagactacggaagtggagcaacaagctctt
ttgccatccgttcgggatccaaaattatggatggtcaagtgtgcaattggccgggaacgg
gaaacggctgtttgtttgatgcaaaaatacattgataaaggatctgagttgcaaattcgg
tctgttgttgctcttgatcatcttaaaaactatatatatattgaagcagacaaagaagcc
catgtgagagaggcttgcaaaggcttgcgcaatatttttgggcagaaaatcatgcttgtc
ccaatcagagaaatgactgatgttctttcagttgaaagcaaagtaattgatctttccagg
gacacatgggtcaggatgaagattgggacttacaaaggagaccttgccaaagttgtagat
gtagacaatgtgcggcagagagttacagtaaagttaattccaaggattgacttacaggct
cttgcaaacaaactggaaggcagagaagcaccaaagaagaaggcatttgtacctcctcca
cgttttatgaatgttgatgaagctagggaattacatattcgtgtcgagcgaagaagagat
ccgatgactggtgattattttgaaaatattggcgggatgctttttaaagatggtttcttg
tataaaactgtatcaatgaagtcaattagtgctcagaacattaagccatcatttgatgaa
cttgagaagtttcgatcacctggagagaatggagatggtgatgttgccagtttgtcaacc
ttgtttgcaaacagaaagaagggtcattttatgaagggtgatgcagttattgttgtcaag
ggagatctgaaaagtctaaagggatgggttgagaaagttgatgaagaaaatgttcatatt
agacctgaaatgaagggtcttccgaaaacacttgcagtgaatgaaaaggaactatgcaag
tattttgaacctggcaatcacgtgaaggttgtatcaggcacacatgaaggtgtcaccggc
atggttgttaaggttgagcagcatgtgctcattattctatctgatacaacaaaggaacat
atccgtgtatttgctgatgatgttgtggaaagttctgaggtaacgacaggtgttaccaaa
attggggactatgagcttcatgatcttgtactattggacaatatgagctttggtttaatc
attcgtgtagaaagtgaagcctttcaggttctcaagggagttacagagagggctgaggtt
gcacttgttagactaagagagatcaaatgcaaaattgagaagaaaacgaacgtgcaagat
cggtacaagaacacagtatcggtgaaagatgttgttaggatcattgatggtccttgcaaa
gggaaacaaggtcctgtagagcacatatatagaggagtcttgttcatctatgatcggcat
caccttgagcatgctgggtatatttgtgctaaatcccactcgtgtattgtcatcggagga
tcacgttctaatggagatagaaatggtgattcctactcaaggttgggcagttttaaaact
ccccgagtacccccttcaccaaggagatttcctagaggaggccctccattcgactctggg
ggaagaaatagaggtggaaggggagggcacgatgctttggttggtaccacaataaaggta
cgacagggccctttcaagggctaccgtggtcgtgttgtagatatcaaaggtcaattcgtt
agagttgaactagaatcacaaatgaaggttgttacagttgatcggagccacatctcagat
aatgtggttgtttcaactccataccgtgatgcacctcgatatggtatgggaagtgaaacc
ccaatgcatccttctcggactccattgcgtccatacatgacaccaatgagagattcagga
gcgacacctattcatgatggcatgaggacacctatgcgtgatcgagcctggaatccttat
gcaccaatgagtcctccaagggataattgggaagatgggaaccctggctcttggggaacc
agtccgcagtatcagccaggaagccctccctctggaacatatgaagctccaactcctggt
tcaggctgggctagcactcctggtggtaattatagtgaagctggaacaccaagagatagc
agttctgcatatgccaatgctccaagcccgtacctgccatcaactcctggtggccagcct
atgacacccagttcagcgtcctatctccccggcactcctggagggcagctaatgacaccc
ggaactaatggtcttgatatgatgtctcctgttataggtggagatggtgaaggaccatgg
ttcataccagacatattggttaccgttcaccggactgcagatgaatctgctgttggtgtc
atcagagaggtgcttcaggatggctcttgtaaaatagtccttggggctcatggcaacgga
gaaacgataactgctcttcctagtgaaattgagatggtggtgccaaggaaatcagacaag
atcaagatcctgggtggtgcacatcgtggtgctactggcaagttaattggcgttgatggc
actgatggaattgtaaagttggaggacactctcgatgttaagatattagatatggttata
ctggcaaaacttgcacagatgtga
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