Populus trichocarpa (black cottonwood): 7494337
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Entry
7494337 CDS
T01077
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7494337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7494337
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
7494337
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
7494337
NCBI-ProteinID:
XP_002305651
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Position
4:complement(2626723..2632878)
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AA seq
585 aa
AA seq
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MGPNPKMKREFLDSTRSSPFPDEVLERVLSLLKSHKDRSAVSLVCKDWYNAESWSRTHVF
IGNCYSVSPEIVARRFPIIKSVTLKGKPRFSDFNLVPENWGADVHPWLVVFATKYPFLEE
LRLKRMAVSDESLEFLAVNFPNFKVLSLLSCDGFSTDGLAAIATHCKSLTQLDIQENGID
DKSGGWLSCFPENFTSLEVLNFANLNTDVNFDALERLVSRCKSLKVLKVNKSISLEHLQR
LLVCAPQLTELGTGSFTPELTTRQYAELESAFNQCKNLHTLSGLWEATALYLPVLYPVCS
NLTFLNLSYTFLQSLELASLLRQCPRLRRLWVLDTVGDKGLEAVGSNCPLLEELRVFPAD
PFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNCPDFTHFRLCIMNP
GQPDYLTNEPMDEAFGAVVRTCTKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFAGSS
DRGMQCVLEGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSACNVTMNGCRLLARE
MPRLNVEVMKEDGSDDSQADKVYVYRSVAGPRRDAPPCVLTLSGL
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaaatccaaagatgaaaagggaatttcttgactcaacaaggtcatcaccattc
ccagatgaagtactggaacgagttctttcactcttgaaatcacacaaagatcgtagcgca
gtgtctttagtatgcaaggactggtacaacgcagaaagctggtcaagaactcatgttttt
atagggaactgttattcagtctctcctgaaattgttgcacgtagatttccaataattaag
agtgttactcttaaagggaagccaagattttctgattttaatctagtgcctgaaaattgg
ggagctgatgttcatccttggcttgtagtttttgcaacgaagtatccgtttttggaagag
ctgaggcttaagagaatggctgttagtgatgaaagtttggagtttttggctgttaatttt
cctaattttaaggttctttctctgttgagctgtgatgggtttagtactgatgggcttgct
gctattgccactcattgcaagagtttgactcagcttgacatacaagagaatggcattgat
gacaagagtggtggttggttaagctgcttccctgaaaacttcacatcattggaagtacta
aactttgccaatctgaatactgatgtcaatttcgatgcacttgagagacttgtaagtagg
tgcaagtcactaaaggttctgaaggtcaacaaaagtatttccttggaacacctacaaagg
ctgttagtttgtgctccacaattaacagagcttggcactggttcattcacaccagagctc
acaactcgtcagtatgcggagcttgaaagtgcatttaaccagtgcaagaatttacatacc
ctttcaggtttatgggaggcaacagcactatatctaccagttctgtaccctgtctgttca
aacttgactttcttaaacctgagctatacttttctgcaaagtcttgaacttgctagtctt
ctccgtcaatgtccacgacttagacgcctctgggtcctggacactgtgggggacaaaggg
ctggaggctgttggatccaactgtccattgcttgaggagctccgtgtcttccctgccgat
ccctttgatgaggaaattatccacggggtgactgaagcagggtttgttgctgtctcttat
ggatgtcgaagactccactatgttctctacttttgccggcagatgactaatgctgcagta
gcaaccattgtgcagaactgccctgatttcacccactttcgtctttgcataatgaatcca
ggccaaccggattacttgacaaatgaacctatggacgaggcttttggggctgtggtgagg
acttgcactaaactacagaggctttctgtttcaggtctcttgacagacctgacatttgaa
tatattgggcagtatgccaaaaatctggaaactctgtctgtggcttttgcgggcagcagt
gatagggggatgcagtgtgtgctagaaggttgtccaaagttgaggaaacttgagataagg
gactgcccatttggaaatgcagcacttctttcaggtttggagaagtacgagtctatgagg
tcactctggatgtcagcctgcaatgtgacaatgaatggctgtcggttattggcaagggag
atgcccagattgaatgttgaagtaatgaaagaggatggaagtgatgactctcaggctgat
aaagtttatgtttaccgttctgttgcggggccaagaagggatgctccaccttgtgtactc
actctctcaggtttataa
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