KEGG   Populus trichocarpa (black cottonwood): 7494341
Entry
7494341           CDS       T01077                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 28 homolog 1
  KO
K12184  ESCRT-I complex subunit VPS28
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    7494341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    7494341
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    7494341
Membrane trafficking [BR:pop04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-I complex
    7494341
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   7494341
  Exosomal proteins of other body fluids (saliva and urine)
   7494341
  Exosomal proteins of colorectal cancer cells
   7494341
  Exosomal proteins of bladder cancer cells
   7494341
SSDB
Motif
Pfam: VPS28 GDH_C NUP160_helical
Other DBs
NCBI-GeneID: 7494341
NCBI-ProteinID: XP_002305661
UniProt: A9PBK3
LinkDB
Position
4:complement(2783611..2785525)
AA seq 209 aa
MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYEMECQKLIAHFKTLA
SSLKDTVPSIERFADTYKMDCPAAINRLVTSGVPATVEHRAAAAVSSTTSASIVAECVQN
FITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFEGKTKMKEWILRLSKMGAADE
LTEQQARQLHFDLESSYNSFMAALPSAGT
NT seq 630 nt   +upstreamnt  +downstreamnt
atggaggtcaagctatggaatgacaagcgcgagagagaaatgtatgagaattttgccgag
ctatatgcaataataaaagccacggagaagcttgaaaaggcatatgttcgtgacattata
tcctcatctgagtatgaaatggagtgccagaaactcattgcccatttcaaaactttggct
tcctctctgaaagacacagtccctagcatcgagcgctttgcagatacatacaagatggac
tgcccagctgccatcaaccggcttgtgacctccggggtgcctgccacagtggaacaccgt
gctgctgctgctgtgtcgtctaccacctcagcttccattgtggctgagtgtgtccagaac
ttcatcacagctatggattcgttgaagttgaatatggtggctgtggaccaggtgcatcct
ttgctttcagacctctcagcctcactgaacaagctgagtattttgccacctgactttgag
gggaagacaaagatgaaagaatggattttgaggctgtctaagatgggggctgcagatgag
ctgacagagcagcaggcccggcaacttcattttgatctggagtcctcatacaattcattt
atggcagctttgcctagtgctggtacttga

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