Populus trichocarpa (black cottonwood): 7494438
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Entry
7494438 CDS
T01077
Name
(RefSeq) vacuolar sorting protein 18 isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04142
Lysosome biogenesis
pop04145
Phagocytosis
pop04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
7494438
04142 Lysosome biogenesis
7494438
04148 Efferocytosis
7494438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7494438
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
7494438
Hops complex
7494438
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
Clathrin
VPS18_RING_C
zf_RING_Vps8
zf-RING_Vps41
zf-RING_11
TXNDC16_2nd
Nup54_57_C
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
7494438
NCBI-ProteinID:
XP_002319385
LinkDB
All DBs
Position
13:14439624..14450938
Genome browser
AA seq
988 aa
AA seq
DB search
MDQSRQVFTVDLLERYASKGRGVITCMAAGNDVILLGTSKGWLIRHDFGAGGSSDFDLSS
GRPGDQSIHRVFVDPGGSHCIATVIGGGGAETFYMHAKWSKPRVLGRLKGLIVNAVAWNR
QLITEASTKEVVIGTDNGQLFEMAVDEKDKREKYIKFLFELKELPEAFMALQMETASLSN
VTRYYVMAVTPTRLYSFTGIGLLETVFASYLERAVHFMELPGEIPNSELHFFIKQRRAMH
FAWLSGAGIYHGSLNFGAQHSYINGDENFVENKALLDYSKLSDGVDAVKPSSMAVSEFHF
LLLIGNKVKVVNRISEQIIEELQFDQTSESVSSGVIGLCSDATAGLFYAYDQNSIFQVSV
NDEGRDMWKVYLDMKDYAAALANCRDPLQRDQVYLVQADAAFTSRDFLRAASFYAKINYI
LSFEEVTLKFISVGEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEE
DNALDKHSFEYQSINQEFRAFLSDCKDVLDEATTMRLLESYGRVEELVYFASLKEQYEIV
IHHYVQQGETKKALEVLQKPAVPIDLQYKFAPDLIVLDAYETVESWMTTKNLNPRKLIPA
MMRYSSEPHAKNETHEVIKYLEFCVHCLHNEDPGVHNLLLSLYAKQEDDDALLRFLQCKF
GKGRENGPDFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD
KVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNNQIEQLKEEMNDATHGADNIRNDISALAQRYAVIDRDEECGVCK
RKILIVGGDYRMSRGYTSVGQMAPFYVFPCGHAFHVHCLIAHVTCSVNETQAEYILDLQK
QLTLLGDGARKDMNGGITEDSITSMTPADKLRSQLDDAIASECPFCGELMIRQISLPFIL
SEEALLVNSWEIKPQNNLANMRTLSLPV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatcacggcaagtattcaccgtcgatctcctagaacggtacgcatcaaaaggc
cgtggtgttatcacctgtatggcagcaggaaacgacgtcatcttattaggtaccagcaaa
ggctggcttattcgacacgatttcggcgccggcggttcttccgattttgatctttctagt
ggacggcctggcgatcaatctatacatagagtgtttgtggatcctggtggtagccactgt
atcgccaccgttattggtggaggtggtgcggagacgttttatatgcatgctaaatggagt
aagccacgtgtgcttgggaggttgaaaggtttgatcgttaatgctgttgcttggaatcgg
caactgattactgaagcgtctacgaaggaagttgttattgggacggataatgggcagctg
tttgagatggctgtagatgagaaagataaaagggagaagtatataaagtttttgtttgaa
ttaaaggaattgcctgaagctttcatggctttgcagatggaaacggctagcttaagcaat
gtaaccagatattatgtgatggctgttactccaacacgactttattcttttactggaatt
ggattattggagacagtttttgctagttacttggaacgcgcggtgcattttatggaactg
ccaggggaaataccaaacagtgaattgcatttttttatcaagcaaagaagagcaatgcat
tttgcatggctttctggagcaggtatctatcacggtagcttaaattttggagcgcagcat
agttacataaatggtgatgagaattttgtggagaataaggctcttttggactattcaaaa
ttaagtgatggtgttgatgcagttaaaccgagctcaatggcagtttcagaatttcatttc
ttacttcttattggaaacaaggttaaggttgttaacagaatcagtgagcaaattatagag
gagcttcagtttgaccaaacatcagaatcggtttcaagtggtgttatcggattatgcagt
gatgccactgctggcttgttctatgcatatgaccaaaattctatttttcaggtgtctgtt
aacgatgaagggagagatatgtggaaggtgtatctagacatgaaagactatgctgcagct
ttagcaaattgccgagaccctctccagagagaccaagtatatttagtgcaggcagatgct
gctttcacctccagggattttctaagagcagcatcgttctatgcaaaaattaattacata
ctatcatttgaggaagttacgttgaagtttattagtgtaggcgaacaggatgctttgcga
actttcttgttgcggaagcttgataatcttgccaaggatgacaagtgccaaataacaatg
atttccacatgggcaactgaattgtacttggataagataaatcggctactcttggaagag
gataatgctttggacaaacatagttttgagtaccaatcaatcaatcaagagtttcgtgct
ttcctcagtgactgcaaggatgtcttggatgaggcaactactatgagacttctagagagc
tatggcagggttgaagaactagtgtattttgctagtctgaaggaacagtatgaaattgta
attcaccactatgttcagcaaggagaaacaaagaaagcattggaagtgcttcagaaacct
gctgttccaatagaccttcagtacaagtttgccccagatctcattgttcttgatgcatat
gaaacagttgagtcatggatgaccacaaaaaacctgaacccaagaaaactgattcctgca
atgatgcgttattcaagtgaacctcatgcaaagaatgaaacccatgaagtcatcaaatat
ttggaattctgtgttcattgtttgcataatgaggatcctggagttcacaacttgcttctt
tctctctatgctaaacaggaagatgatgatgcacttttgcgtttcctacaatgcaagttt
gggaaaggacgagaaaatggtccagatttcttctatgatcccaagtatgccttgcgcctt
tgcctcaaagaaaagcggatgcgtgcctgtgttcacatatacagcatgatgtccatgcac
gaagaagcagttgctcttgctctacaggttgaccccgagcttgcaatggctgaagctgac
aaggtggaagatgacgaagatttgagaaagaagctttggcttatggttgccaagcatgtt
attgaacaagaaaagggaactaaaagggagaatataaggaaggcaatagcatttctcaag
gaaactgatggccttctaaagattgaggatatattaccattctttccagactttgcccta
attgatgacttcaaggaggcaatttgctcatcattggaggattacaacaaccaaatcgaa
caactaaaagaggagatgaatgatgctacacatggcgctgacaacataagaaatgatatt
agtgcacttgctcaaagatatgctgtcattgaccgtgacgaggaatgtggggtttgtaag
cgcaaaatcttgattgtgggtggggactaccgtatgtctcggggctatacatcagtagga
caaatggctcccttctatgtatttccatgtgggcatgcctttcatgtgcattgcttgatt
gcccatgtgacatgttctgtcaatgaaactcaagcagaatatatactggatctgcagaag
cagcttacgttgcttggtgacggagctaggaaagacatgaatggtggcataactgaggat
tccattactagcatgactcctgcagataagctccgttctcagctggatgatgcaatagca
agcgaatgtccattttgtggtgaattgatgatccgtcagatctctttgccttttatactc
tctgaagaagcactgctggttaattcatgggagataaaaccacagaacaaccttgcgaac
atgaggaccctctctttaccggtatga
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