Populus trichocarpa (black cottonwood): 7494462
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Entry
7494462 CDS
T01077
Name
(RefSeq) protein NEDD1 isoform X2
KO
K16547
protein NEDD1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7494462
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pop04812
]
7494462
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
7494462
Microtubules and associated factors
gamma-tubulin ring complex
7494462
Cytoskeleton proteins [BR:
pop04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
7494462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
EIF3I
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_HPS5
NYD-SP28_assoc
NBCH_WD40
PAN2_N
PsbK
Motif
Other DBs
NCBI-GeneID:
7494462
NCBI-ProteinID:
XP_002312120
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All DBs
Position
8:complement(3648055..3654396)
Genome browser
AA seq
801 aa
AA seq
DB search
MMNLADPSMALLAASGGDTVKLFDVSVEPGDPCTLSYTPTPGCLVNAVKWNHTNLVVASA
GEDKKISLWRKNGQSMGTIPVSGTDSGDSIEESILAISFSNKGSRYICSGGSGQVVRIWD
LQRKRCIKWLRGHTSPITGAMYNCKDEHLASISLSGDLILHNLASGARATELKDPNKQVL
RVLDYSRVSRHLLVTAGDDGSVHLWDTTGRSPKVSWSKQHSAPTAGISFSPSNDKIIASV
GLDKKLYTYDSGSRRHTSLISYEAPFSSLSFRDDGWVLAAGTSSGRVVFYDVRGKPQPFT
VLRAYGSSEAVTGLCWQRSKPVIVNESNCTAEIALLGGAVDDSILMPDPLPSVTSSSVAL
SSVSGSGNSGRSGPALESSSLTATVGGPASSIPNLSLAEETPHRSHLWPGTLTRLNPPRS
SYNFKDEMEVFSPLVDVQPITPSLDKFWTDHEGLKKDNLPVDKKPSSLLFPSSSRRFPFA
EDGTNDHPIFDWKSSSTSRQDDTQSFTSLGGSTPTPSSKSEDSSITPPEAWGGERLSDKI
AHLRQPLNLPPRFGMTSGSSTSGSMFSSLQDLPSSTSQSSMSSLTSSSRGFSNLRARDVS
LTQETSVGFPEHISSSSMFLSLGAKGITGPANLETSGPASLNLPRRFSTYAERISTTSSF
SDGTSLSVGSPKTKKTGVETREELLNSLLLRSDALAVTEPGIVPAMNGGAAQPHKALQPD
TQQGSSFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILRQFHMQEVEFSSVMSSILENQ
AELMKEIKTLRKENQELRQLL
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacttggcggatccatcaatggcgttactggcggcgagtggtggcgacaccgtg
aagcttttcgatgtatcagtggaaccaggagatccatgtactttgagttacacaccaact
ccgggttgccttgttaacgcagtcaagtggaatcacactaatttagtggtggctagtgct
ggagaagataagaagatttcattgtggaggaaaaatgggcagagcatgggcacaattcca
gtttctgggacagatagtggggacagcattgaggaatctatattggctattagctttagt
aataagggatctagatatatatgctctggaggaagtggtcaagttgtaagaatatgggat
ctgcagaggaagcgctgcattaaatggttgaggggtcataccagtccaataacaggtgct
atgtacaattgcaaagatgagcacctggcttccataagtttgagcggggaccttattctg
cacaaccttgcatctggtgcaagggcgacagaactcaaggacccaaataaacaggtacta
agggtgcttgattattcacgagttagccgacaccttttggtgaccgctggcgatgatggt
tctgtgcatttgtgggatacaactggtcgcagcccaaaggtttcgtggtcgaagcaacat
tctgcaccaactgctggtattagcttctcgccatcaaatgacaagataatagctagtgtt
ggactggataaaaagctatacacttatgactcggggtctagaaggcacacatctctcatt
tcttacgaggcacctttttcttcactgtcttttagagatgatggttgggttctggctgct
ggaaccagcagtggtagggtagtgttctatgatgttcgaggaaaaccacagcctttcact
gtacttcgtgcttatggcagttcagaggctgttactggtttatgctggcaaagatcaaaa
ccagttattgtaaatgagagcaactgcactgctgagatagctcttttgggaggtgctgtt
gatgattccattcttatgccagatccacttccttctgtaacatcatctagtgttgctcta
tcctcagtgtctggctctggtaattctggtcgttcaggtcctgcattagaatcgtcatct
cttacagcaactgttggtggacctgcatcaagtatacccaatctgtctttagcagaggaa
acgccacatcgaagccatctttggcctggaacattgaccagattaaatccacctcgttct
agttacaattttaaggatgaaatggaggtgttctccccactagtggatgttcagcctatc
acgccctcacttgataagttttggactgatcacgagggattgaaaaaggataatctgcct
gttgataagaagccttcatcattgttgtttccttcatctagtaggagatttccttttgca
gaggatgggaccaatgatcatccaatatttgattggaaatctagttcaacttcaagacag
gatgacacccagtctttcacatcactagggggttctactcctactccatcttccaagagt
gaagattcctccatcactcctccagaagcttggggtggtgagaggttatctgataaaatt
gctcacctacgccagccactcaatttgccaccacgttttgggatgacttctgggagttca
acatcaggatcaatgttctctagtttgcaagatctgccctcttcaacgagtcagtcaagt
atgagctcattgactagttccagccgtggcttttcaaatctgcgcgccagagatgtatct
ttgactcaggagacgtcagtgggatttccagaacacatttcctctagttccatgtttctg
tctttaggtgcaaaaggcatcacaggaccagctaaccttgaaacatcaggaccagcatca
ttaaacttacctcgcaggttttcaacatatgctgagagaataagcactacttcttccttt
agtgatggaacatccctctctgtgggttcaccaaaaacaaagaaaaccggagttgaaact
agggaagaactgttgaatagcctgttgttgaggtctgatgcattggctgtcactgaacca
ggaattgttccagcaatgaatggaggagccgcacagccgcacaaagctcttcagccagat
acacagcaggggagttccttcactcttcaactcttccagcgcactcttgaagaaactctt
gattcatttcagaaatccatacatgaagatatgaggaaccttcatatagaaattcttaga
caatttcatatgcaggaggtggaattttctagtgtgatgagctcaatcctggaaaaccaa
gctgagctgatgaaagaaatcaagacccttaggaaagaaaaccaagaactccgccaattg
ctttga
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