KEGG   Populus trichocarpa (black cottonwood): 7494549
Entry
7494549           CDS       T01077                                 
Name
(RefSeq) protein decapping 5
  KO
K18749  protein LSM14
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7494549
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     7494549
SSDB
Motif
Pfam: LSM14 FDF SM-ATX
Other DBs
NCBI-GeneID: 7494549
NCBI-ProteinID: XP_002305956
LinkDB
Position
4:complement(9121257..9127353)
AA seq 579 aa
MAAATAEAARSSSSSSSTGSGGSGGSSADSYVGSLISLTSKSEIRYEGVLFNINTQESTI
GLRNVRSFGTEGRKKDGLQVPPSDKIYEFILFRGTDIKDLQVKSSPPVQTATPVHNDPAI
IQSQYPQAATASMNLPSSGNGSLTDPSSHASSNGLPRPTFQGSLPQYQPDASLESWGPSH
LLPTTNGSGLAMPMYWQGYYGPSNGVQAPQQALLRPPPGLSMPPSMMQSVQYPAMNASNT
SASPLSESPPLLPPFSTSTLNLQTSTIPSSRSSAMVSDSTNLTPDRVSTQTLPSNLPLAS
PLTIAVDKIAIASPGSYLPKTVPDPIMPFKRMSEPPSSIMRTSSSVLNEGKTPLVTPGQL
SQPGPPIVPSLQSSQIAQKDVEVVQVSSPELSALPPTTAAAEVQKPILPLPSQPEHKVYG
APMYTYHTSRGGRGRGRENEISRSATRFEEDFDFTAMNEKFNKDEVWGHLGKSHKAQDRD
DLLDEDDVGSSKLETKPVYVKDDFFDSISCDALDGGSRNGRARFSQQSRRDTDTFVNFSH
HWGGRGGWGPGRGGRSRGGYYGRGYGYAGRGYGMSHGSF
NT seq 1740 nt   +upstreamnt  +downstreamnt
atggcagctgcaacagcagaggcagccagatcttcttcttcttcttcttctacaggtagt
ggtggtagtggtgggtcatcagcagattcctatgtaggtagcttgattagcttgacttca
aagtctgagattcgttatgaaggcgttcttttcaacatcaacactcaagaatccaccatc
ggcttaagaaatgtaagatcgtttggaacggaagggcggaaaaaggatggcctgcaagtt
ccaccaagcgataaaatttatgagttcattctcttccgaggaactgatatcaaggatttg
caggtcaagtcttctccacctgttcagactgcaacacccgtgcacaatgatcctgcaatc
atccagtctcagtatcctcaagcagcaactgcatccatgaatttgccttcttctggtaat
ggatctctaacagatccaagttcccatgcttcatccaatggtcttcccaggccaacattt
caaggcagtcttccccaatatcagcctgatgcgagtttagaatcatggggtccatcacat
ctccttccaaccacaaatggtagtgggcttgccatgccaatgtattggcagggatactat
gggccctcaaatggagttcaggccccacagcaagctttgcttcgacccccacctggcttg
tcaatgccaccttccatgatgcaatctgtgcagtatcctgccatgaatgcatccaacact
tcagcttctccattgtcagaaagcccccctctgttgccaccatttagtacaagcacctta
aatttgcagacttctacaattccttcttcacggtcttctgcaatggtttcagactctaca
aatttaactcctgatagggtttctactcaaacacttcctagtaacttgccattggcatcc
ccattgactattgctgtagataaaattgctattgcatcaccaggttcttacctgcccaag
acagtcccagatccaataatgccttttaaaagaatgtctgaacctccatcctccatcatg
aggacatcaagttcagttttgaacgagggaaaaacacctctggtgacaccgggccaactt
tcgcagcctggccctcccattgttccctcactgcagtcttcacagatagctcaaaaggat
gtcgaggtggtgcaggtatcatcaccagaattgtcagcattgccaccaacaacagctgca
gcagaagtgcagaaacccatattacctctaccttcacaacctgaacataaggtatatgga
gcgcctatgtacacttatcatactagtagaggaggacgtggaagggggagagaaaatgag
atttcacgttctgctaccagattcgaggaggattttgattttacagcaatgaatgagaaa
ttcaataaggacgaagtatggggtcaccttggtaagagtcacaaagctcaagacagggat
gatttgctagatgaagatgatgttggatcatcgaaacttgagaccaagcctgtttatgtg
aaggatgacttttttgattccatatcatgtgatgctcttgatggtggatcacgtaatggg
agagctagattttcccagcagtcgagaagagatactgacacatttgttaatttctcccac
cattggggtggtcgaggaggttggggacctggccgaggtggtcgatcacgtggtggttat
tatggaagaggctatggttatgctggtcgaggttatggcatgtcacacggttccttctaa

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