Populus trichocarpa (black cottonwood): 7494602
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Entry
7494602 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase ATL41
KO
K19038
E3 ubiquitin-protein ligase ATL41 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7494602
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7494602
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
7494602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-RING_16
zf-RING_6
zf-RING-like
zf-RING_10
zf-RING_4
zinc_ribbon_16
Prok-RING_4
PHD_NSD
zf-C3HC4_4
FANCL_C
Zn_ribbon_IFT122_C
RINGv
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
7494602
NCBI-ProteinID:
XP_002325584
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All DBs
Position
19:12937511..12938600
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AA seq
258 aa
AA seq
DB search
MGDNQVPDPTVPAWRPFQPSSRDNSLPGFNHNTNYDLNSKIMLTAILSLSFVVVLVIVLH
IYARCALRRHQARRRAVMNSLGLTNASVNSGEPPKRGLDPTVIASLPIFVYQQTEGQTED
DLIECAVCLSMLEDQEMARILPNCKHKFHAECIDKWLSSHSTCPICRTEAEPMIQPEPRE
GPAGGTAHTAPMLEPMNSTSVCDEGTSSSVGGNQPSPKVVGSGSRLSSFRRMLSRERSSR
RIQPEVQDQEGFQDLERQ
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgggagataatcaggttcctgatcctaccgttcctgcctggcgccccttccaacccagt
tcacgcgacaatagcctcccaggctttaatcataatactaattatgatttaaacagcaag
attatgctcactgcaattctatcattatcctttgttgttgtgcttgttatagttcttcat
atttatgcaagatgtgctctaaggcgtcatcaagcccgtcgccgcgctgtcatgaatagc
ctagggctaactaatgctagtgtcaactccggggagccacccaagagggggcttgatccg
acagtcatagcctcactccccatatttgtttaccagcaaactgaaggccaaactgaggat
gatttgatagagtgtgctgtttgcttaagcatgcttgaggatcaagaaatggctaggatt
ttaccgaattgtaagcacaaatttcatgctgagtgcatcgataaatggttaagctcccat
tctacctgtcctatttgtcggaccgaggctgagccaatgatccagcccgagccacgtgaa
ggtccggctggtggtactgcacacacagctccaatgttggagcctatgaattctacatcg
gtatgtgatgagggcacatcatcatcggttggtggaaatcaaccatctccaaaagtcgtc
ggttcgggttcacggttgagctcgtttcgaaggatgcttagtcgtgaacgatcatcaagg
agaatccaacctgaggttcaagatcaagagggttttcaagatttagagagacaatga
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