Populus trichocarpa (black cottonwood): 7494756
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Entry
7494756 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7494756 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7494756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7494756
Spliceosome [BR:
pop03041
]
Complex C
Other components
Step II factors
7494756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
eIF2A
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
7494756
NCBI-ProteinID:
XP_002312609
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Position
8:complement(11937483..11940263)
Genome browser
AA seq
593 aa
AA seq
DB search
MNKVTHPSPSPTMDLLQNYHNDDELDEHGQNPNSSPDSSSPPRLLPSKSAAPKVDDTMLA
LTVANQTLSKPIDPVQHAVAFNPTYDQLWAPVLGPAHPYAKDGIAQGMRNHKLGFVENAA
IDSFVFDEQYNTFHKYGYAADPSASAGNNYVGDLDTLEKTNGISVYNIPQHEQKKRKIEK
KREVTEEEGDGDDVMDKEEVENPATDAWLMKNRKSPWAGKKEGLQTELSEEQQKYAEEHA
RKKAEKAGGEKGEVVADKTTFHGKEERDYQGRSWLAPPKDAKASNDHCYIPKRLVHTWSG
HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTK
FLTASYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN
SGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPA
ISLHPNSNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG
DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggtaacgcacccctctccatccccaacgatggatcttctccaaaactaccat
aacgacgacgaattagacgaacatggccaaaaccctaattcctctccagattcatcatcc
cctccgcgcctcctcccttccaaatccgccgctcccaaagtggacgacaccatgctagcc
ctaacagtagccaatcagaccctctctaaacctatcgaccccgttcagcacgccgtcgcc
ttcaaccctacttacgaccagctatgggctccggttctaggccccgcccatccctacgcc
aaggacggaattgcccagggcatgcgcaaccacaaactcggcttcgtcgagaacgctgcc
atcgactccttcgtcttcgacgagcagtacaacactttccacaagtatggctacgcggcg
gacccgtccgcctctgcaggtaataattatgttggtgatttggatactttagagaaaact
aatggaatttctgtttataacattccgcaacatgaacaaaagaagcgaaaaattgagaag
aaaagggaagtaaccgaggaagagggtgatggagatgatgtaatggataaggaggaggtc
gagaatccggccacggatgcgtggttgatgaagaataggaagagcccttgggccggtaaa
aaggagggattacaaactgagttgtctgaagagcagcaaaaatatgcggaggagcacgcg
agaaagaaggcggagaaagctggcggtgagaaaggtgaggttgtggctgataagactact
tttcatggtaaagaagagagggattatcaagggaggtcgtggcttgcgccacctaaagat
gctaaagcaagtaatgatcattgctatatacctaagaggttggtgcatacatggagtggg
catactaaaggagtctctgctataaggtttttccctaaatatgggcacttgatactttct
gcgggtatggatacaaaggtgaagatatgggatgtgtttaattcgggcaagtgtatgaga
acttacatgggtcattctaaggctgttagggatatttcattttgtaatgatggcactaag
tttttgactgctagttatgataagaatattaagtactgggatacagagactggccaggtt
atctctacgttttcaactgggaagattccgtatgttgttaagctcaatcctgatgatgat
aagcagaatatattgttggcgggcatgagtgataagaagattgtgcagtgggatatgaac
tcagggcagattactcaggagtatgaccagcatttgggggcagtgaataccatcactttt
gtggataataataggagatttgttacttcaagtgatgataaatcactccgtgtatgggaa
tttgggatccctgttgttataaagtacatcagtgagcctcacatgcattctatgccggcg
atctctcttcatcccaattcgaattggcttgctgcgcagagtttggataaccagatcctt
atttatagtaccagggaaagattccagttgaataagaagaagaggttcgctgggcacatt
gtggctggttatgcttgtcaagtcaatttctcaccagatggacgatttgttatgtcagga
gatggtgagggtaaatgctggttttgggactggaagagttgtaaagttttcaggaccctc
aaatgtcacgagggagtatgcattgggtgtgagtggcatccactagagcaaagtaaagtg
gcaacttgtggctgggatggcttgattaaatactgggactag
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