Populus trichocarpa (black cottonwood): 7494805
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Entry
7494805 CDS
T01077
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
7494805
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
7494805
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
7494805
NCBI-ProteinID:
XP_002311747
UniProt:
A9PDA5
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Position
8:12553215..12555215
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AA seq
402 aa
AA seq
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MAIPLSLSILLLILAPNFISCSPVQDPELVVEEVHRSINASRRKLGFLSCGTGNPIDDCW
RCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDPGNDDPVNPKPGTLRYAVIQEEP
LWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKQ
GGNAYVRDSPGHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISN
NYLTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWK
MYAIGGSADPTINSQGNRFLAPNDRFNKEVTKHEDAPQSEWKGWNWRSEGDLLLNGAFFT
ASGAGASSSYAKASSLGARPSSLVSSITAGAGSLACKKGSRC
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcccactctctctttcgatcctcctgcttattctagctccaaattttatttcc
tgttcgccagttcaagatcctgaattggtagtggaggaagtacacaggagcatcaacgcc
tctagaagaaaattgggtttcctttcttgtggaaccggcaatccaatagacgattgctgg
aggtgtgaccccaaatgggagaagaatcggcagagattagcagattgtgcaattgggttc
ggtaagcatgcgatcggtggcagggatggtaagatatatgtagtgacagaccccgggaat
gatgaccctgtgaatcccaagccaggcactcttaggtatgctgttatacaagaagagcct
ttatggatcattttcgctcgagacatggtgatcaagcttaaggaagagctgatcatgaac
tctttcaagacgatcgatgggagaggagccagtgtgcacattgctggtggtccatgcatc
actgtacagtatgtgaccaacattataattcacggtataaatattcatgattgtaagcaa
ggagggaatgcttatgtgagggattccccaggtcattatggatggaggactatatcggac
ggtgatggagtgtctatattcggaggcagccatgtgtgggtggatcattgctctttatcc
aattgcaatgatgggttgattgatgcgattcatggatccacagccataacaatctcaaac
aattacttgacccatcacaacaaggtcatgctcttgggccatagtgatagctataaacaa
gacaagaacatgcaagtcaccattgccttcaaccactttggagaagggcttgtgcagaga
atgccaaggtgtagacatggatatttccacgtggtaaacaacgactactcacattggaaa
atgtacgcaattggaggcagtgccgatcctacaattaacagccaaggcaataggtttctt
gctcccaatgacagatttaataaagaggtaactaaacatgaggatgcaccacaaagtgaa
tggaagggttggaactggaggtctgaaggggatttgctgttaaacggggcattcttcaca
gcatctggagctggagcttcctctagttacgccaaggcatccagcttaggtgcaagacca
tcttccttggttagctccatcacagcaggagcaggttcacttgcttgcaagaagggttcc
cgttgctga
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