Populus trichocarpa (black cottonwood): 7495644
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Entry
7495644 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7495644
KO
K10891
fanconi anemia group D2 protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
7495644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7495644
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FANCD2-I complex
7495644
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FancD2
FANCI_S1
FANCI_S2
Motif
Other DBs
NCBI-GeneID:
7495644
NCBI-ProteinID:
XP_024460106
LinkDB
All DBs
Position
6:complement(1585749..1596576)
Genome browser
AA seq
1504 aa
AA seq
DB search
MVFLHQQNPSRKRPSSFIPPFPQPKIPKSSTTTTKKPPQSQNEAVEDNQVSSSSSSSSVD
KLVSILADAGCTLINPSGPPCLPSDHHKFRNHLNRLFSSSDTAPALRSDFLSGFSSYINL
QHNFRRVLAFSKRDGFGAKRSESLVRQLLLVPAIQLDLQIMLLEKLPEYFDTNSVDSRTT
LSLEDDVARLIIDQFRWLDFVVDPNTFTDKLLQVVSICPLYLKKEIIGSLPEIIGDQSSN
NAVVDSLDQMLQEDSEIIVPVLDAFSNLNLDEMMQEQVISTALSCIRTIDGEHIPNLLSF
LLLSATPQNVRRIISQIRQQLKFVGMSNSSRSSQQRKLKGKSLVDNTEASILDALRSSLL
FKNMLCQEVLKELSSIEKPQDHKVIDIWLLILIYMNGKSMQKSVEKILKKKIVESCIRED
MIDQCICGNKELVQDYFPWFLSLAEHLLACKEQKARDFGIHIYICLFGEFGDTYFRQEVL
GALVTHVGSGVSFEVNSSLNTMALLASKYPQELIPLSAHINGILDYLEGFCMEHLHKVYE
VFSKLALAARSSTYCFGSSIADELFMIIRKQVSHPDMKYKKMGLIGTLKVVSCLGDINNA
TGASPSQKSNCEEALELLRTSLDSCKQLCLPLVLFYDELTTIMLHKKLQPEIVEWVGKHA
GEFESKFLSDLQGGQLPGEDSYCGLEGELWMNLDGDISPICLSILSLSSSSLQSTSSLQV
LPANFLLLSAVERLTNQGSLSGIDALLGCPLHLPSSKYFSEAGWQSLTAKQKQIVCLSLY
YAANWIRELLNAFCTQVTGRFECTSQATKMDIIVKLLKRLRNLVFLENLLNNCIKCHPLS
LPELHLQVDNSGTLLLNKANNRVHFEKNGEHKKTQDNKHKKTSKESSSDPNGKLRQPTIL
DVLRKKGAVTSQDVSNEESTSQSSKGQTFIPADQDSCNSTGLISLEVSAVAKALEAQRFK
FRPLHVQCYSLLMFSNNQKSCCLDPAVELPLYLYLLRDLHNKLDYFMPPGKQFSATCLSA
PAGFTRMTLQEFLSNVRPLFPNLRRHFDNAIFVLKEGDGTCEDHWNVHSASAGNPEVASI
VFSKSVVSTLVFKEVLHSFSKMLNLIDVQMHKSVLSDLLEAFQPREVSENVFSGLQHSPS
PGTIEYLYLGASSFIEDALDMACSFSFMLASESLLTLESLVTSVQTVLDKSETNGKGIHS
PSIHRILPNLRSRLGTSAQKLLSHNWDSEHLENSWKNKGEIVQKILQIYLENSESKSDLL
DKLACSILPVVSSSGTTVEDDHHGFPTLCNATFVVWCRVLHEGNIAILNKLVKEIALFMK
PRAAVQIEAVEKHLIKIQKSVNVVVSLVNLCRTHDKVTVRAMSVKYGGKFVDSFLKVFDF
LQAHFQTHNELIIQLVTELQKATRTIQTLCSEAKGSKQTAITSKIPATKRSMERFLFRVK
ALLHSTSSGCTFWMGNLKHKDLTGQVVSSQAYADDQNNNVDEDLAEAVEEDQPVSVASED
RETE
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcctccaccaacaaaacccctcccggaaacgaccttcctcctttattcctcca
tttccacaaccgaaaatccccaaatcctccacgaccaccaccaaaaaaccaccacaatct
caaaacgaagccgtcgaggacaatcaagtatcatcatcctcatcgtcatcatccgttgat
aaattggtgtcgattctagctgatgctggctgtactttgatcaatccttcaggtccacct
tgccttccttctgatcatcataagttccggaaccatctcaaccgtctattttcttcttcc
gataccgcccctgctctccgctccgatttcctttccggattctcctcttacattaatctt
caacataacttccgcagggttcttgcattttcgaaacgagatggttttggcgccaagaga
agtgagagcttagtaaggcagctcttgctagttccagcaattcagctagaccttcagatc
atgctcctcgagaaacttccggaatatttcgacacgaattccgtagattctagaacaaca
ctgtcgctcgaagatgatgtagccaggctgataattgatcaattccggtggcttgatttt
gttgttgatcctaatacattcacggataagttattgcaagttgtttcaatctgtccttta
tatttaaagaaagagattatcggttctttgccggagatcatcggtgatcaaagtagtaat
aatgctgtcgttgattcgttagaccaaatgctacaggaggattctgagatcattgtgccg
gtgcttgatgcgttttcgaatcttaatctggatgaaatgatgcaagaacaggttatttcg
acagctttatcgtgtattaggacaatagatggggagcatattccgaatttgcttagtttt
ttattgctatcggctacacctcaaaatgttcgaagaataatatcgcagattcgtcagcag
ctaaaatttgtgggaatgtcgaatagttctcgttcaagtcagcagcggaaacttaaaggg
aagtcactcgtggataatacggaggcgtctattcttgatgctttgagatcaagtctttta
tttaagaatatgctgtgtcaggaggttttgaaagaattgagtagtattgagaaacctcag
gatcacaaggtcatagacatatggcttctgatattgatatacatgaatggcaagtcgatg
caaaagagtgttgagaagattctcaagaagaaaattgttgaaagttgtattcgggaagat
atgattgaccagtgtatttgtggcaacaaagaactggttcaggattattttccgtggttt
ctttcattggccgagcacttattggcatgtaaagaacaaaaagcaagggattttggcatt
cacatatacatttgcttgtttggagagtttggtgatacttattttcgacaagaggttctt
ggggcacttgtgactcatgttggatctggtgttagtttcgaagtaaattcttctttgaac
accatggctttgctggcctccaagtatccacaggagttgattccactttctgctcatata
aatggtatactggattacttggaaggattttgcatggaacatctacacaaggtttatgaa
gttttcagcaagctggctttggcagctcgatctagtacatattgttttggatcttcaatt
gcagatgaactgtttatgataatccgaaagcaggtcagccatccagatatgaagtacaag
aagatgggcctaatcgggactctgaaagtagtctcttgtctcggagacataaataatgct
accggggcgtctccttctcagaaatctaactgtgaggaggctttggaactcttgagaaca
tctctggattcttgcaagcagttgtgcttaccattggttctcttttatgatgaactgact
acaataatgcttcataagaaacttcagccagaaattgtagaatgggttggcaaacatgct
ggagagtttgagtctaagtttctatctgatctccaaggtggacaattaccaggcgaggac
tcatattgtggtttagaaggggaactgtggatgaacctggatggtgacatatctcctatt
tgtttgagcattttgtcattgtcgtcctcttccttgcagtctacgtcttcattgcaagtt
cttcctgctaacttcctcttactatccgctgttgagaggttgacaaatcagggatctctt
agtggaattgatgcactacttggctgccctttgcaccttccctcctctaagtacttttct
gaagcaggctggcaatcattgacagctaagcagaaacagattgtatgcctttctctttat
tatgcggcaaactggataagggaactgcttaatgccttttgtacacaagttactggaaga
tttgaatgcaccagtcaggctacaaaaatggatataattgtcaagctattgaagcgactc
aggaacctagtatttctggaaaatttactaaacaactgcatcaaatgccatcctctgtct
ctgccagagctccatcttcaagttgataattctggaactttacttttaaacaaagctaac
aatagggtacatttcgaaaaaaacggtgaacataagaaaacacaagacaacaaacataaa
aagacatcaaaagaatcaagttcggatccaaatggtaaactccggcagccaacaatattg
gatgtgttgaggaaaaaaggagctgtaacaagccaagatgtctcaaatgaggagtctact
agtcaatcttcgaagggacaaacatttattcctgcagatcaagattcctgtaattctact
gggctaataagtttagaagtttctgcagttgccaaggctctagaagcacaacgatttaaa
ttcaggccgctccatgtccaatgttactcccttttgatgttttcaaataatcaaaagtcc
tgttgccttgatcctgcagttgagttacccctctatctataccttttgcgcgatcttcac
aacaagctggattactttatgcctcctggaaaacaattctcggccacatgcttgagtgct
cctgcaggttttactagaatgaccttgcaagagttcttgagcaacgttaggccgcttttt
ccaaatctgagaaggcattttgataatgccatttttgttcttaaagaaggtgatggaact
tgtgaagatcattggaatgttcactctgcttctgctggaaatccagaagtagccagtatt
gtgttttcaaaatctgtagtttcgactttggtatttaaagaagtacttcatagttttagt
aagatgctaaaccttattgatgttcaaatgcacaaatcagttctatcggatcttcttgaa
gcctttcaaccaagagaagtatccgagaatgtgttttctggcctacagcatagcccttca
cctgggacaatagaatatttgtatcttggagcttcatcatttattgaagatgcattagat
atggcatgttcattctcctttatgctggcctcagaatctcttcttaccctagaatcactt
gtaacctctgtccagactgtactggataaatcggagactaatggtaaaggtatacactca
ccatccattcacaggatccttccaaacttgcgcagcagacttggaacttctgcccagaag
cttttaagtcacaactgggatagtgaacatcttgagaacagttggaagaacaaaggggaa
attgtacaaaagattttgcagatttacctggagaatagtgaatctaaatctgatttgttg
gataagcttgcctgctctattttgcctgtggtttcttcatctggaacaacagtagaagat
gatcatcatggtttcccaactctatgcaatgcaacatttgttgtgtggtgccgggtgctg
catgaagggaacatcgctattcttaacaaattggttaaggaaattgctctctttatgaaa
cccagagctgctgttcagattgaagctgttgaaaagcatttgatcaaaatacaaaaatct
gtgaacgttgtcgtatcactagttaacttgtgcagaactcatgacaaggtgactgtgcgt
gccatgtctgtcaagtatggtgggaagtttgtggactccttcctaaaagtttttgatttc
ttacaggctcactttcaaacacacaatgaactcataatccaattggtaacagagcttcaa
aaggccacaagaacaatacagactctatgttctgaagcaaagggctcgaaacaaacagcc
atcactagcaaaattcctgctacaaagcgttcaatggaacggtttttgttccgcgtcaag
gctcttcttcactcgacatcaagtggatgcactttttggatggggaatttgaaacataaa
gatttgacgggtcaggttgtaagttcccaggcctatgcagatgatcagaacaataatgtt
gacgaagatctggcagaagctgttgaggaggatcagccagttagtgttgctagtgaggat
agagaaacagaataa
DBGET
integrated database retrieval system
