Populus trichocarpa (black cottonwood): 7495674
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Entry
7495674 CDS
T01077
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7495674
04121 Ubiquitin system [BR:
pop04121
]
7495674
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7495674
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
7495674
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7495674
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_UBOX
zf-RING_11
zf-C3HC4
zf-rbx1
zf-C3HC4_3
zf-RING_5
zf-ANAPC11
zf-Nse
CxC4
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
7495674
NCBI-ProteinID:
XP_002308856
UniProt:
B9HDT7
LinkDB
All DBs
Position
6:complement(2005822..2008305)
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AA seq
308 aa
AA seq
DB search
MSSSRNTHWCYSCRRPVRLRGRDAACPYCSGGFVQELDDMHRINPLDFFGMDGDDDHDNM
FGLMEAFSAFMRQRMADRSHNHDIRSRSDSIPEHNPGFGPLLIFGGQIPFRLSGNGGLEA
LFSGSPGVAFARGNAGDYFVGPGLEELFEQLSANDRRGPAPATRSSIDAMPTVKITQRHL
RTDSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGSSSGHS
YQSSSSRSRNSNYSGRENSREGRRNPLSYLWPFRSSNSSSNHDETPGSSSPTMHENNHQM
GYSGWPFN
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcagcagaaatacccactggtgttacagctgcaggcggccagttcgactgcga
gggcgagatgcagcttgcccctactgcagtggaggatttgtccaagaacttgatgatatg
catcgcatcaacccgttggatttttttggaatggacggtgatgatgatcatgacaatatg
tttgggctcatggaagctttctcagcctttatgaggcaacgaatggctgatagaagccat
aatcatgatattagatctagatcagattcaattcctgaacataatccaggttttggtcct
ctgttgatctttggtggccaaattccttttaggttgtctggaaatggtgggcttgaagct
ctcttttctgggtctcctggtgttgcctttgcaagaggtaatgccggtgattattttgta
ggccctggacttgaagaattgtttgaacagctttctgctaatgatcggcgaggccctgcc
ccagcaacccggtcatcaattgatgcgatgcccactgttaagatcacacaaaggcatctt
cgcactgattcacactgtccagtttgcaaagataaatttgagctggggtctgaagcaagg
cagatgccatgtaatcatttatatcactcagattgcatagttccatggctagtccagcac
aactcgtgccctgtttgtcggcaggagctaccaccgcaaggatcaagcagtggacacagt
tatcaaagctcaagctctcgaagcagaaacagcaattatagtggaagggagaacagtagg
gaaggaagacgcaatccattatcttatctgtggcccttccgctcatccaattcgagttct
aaccatgatgagactcctggaagcagctcaccaaccatgcatgaaaacaaccaccagatg
gggtattcaggatggccttttaactag
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