Populus trichocarpa (black cottonwood): 7495802
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Entry
7495802 CDS
T01077
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1 isoform X2
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7495802
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
7495802
Surveillance factors
Other surveillance factors
7495802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
7495802
NCBI-ProteinID:
XP_024446364
LinkDB
All DBs
Position
1:33547635..33590653
Genome browser
AA seq
1688 aa
AA seq
DB search
MTDGNLLDDLLLLLSPKSTDERLSSFKDRGGIGEDKALLSLPDDSKDQVAADNTIPLSPQ
WLYAKPVDAKSLTTGASGETRASNSLSHGNSIDNNLKDNWRLDGSQDKKDRRRIAPDVES
SRRWREEERDTGLLGRKDRRKEDNRADSVSARDISETRTLSSSDRWHDGNSRNSAHESRR
DSKWSSRWGPEDKEKDSRTDKRADVEKDDAHSDKQNFGTASHPASEPASERENDSRDKWR
PTSERENDSRDKWRPRHRKDIHSSGPAAYRSAPGFGLDRGRLESPNVRFAAGRGRSNNSG
NLQIGRHLTASSIGSIPLDKNHAFCYPRGKLLDIYRKHKTLPSFDTIPEGIELVSPLTQE
ISIKPLAFVAPDAEEEAFLGDIWQGKITSSGALNNSFREKNDSSSNTTAGFGEGALGEGD
ESFSVKTEEIAHSFGKITGNASGHGTVAETLDTSMAEEKDTHKDDKQKRTTTIARALMDG
FAPADFKKDDPSSFGESGLSDNIMELKAFERQPVEDVAFQNNLKLEDIEPATSFEMDNQL
PDDSSSLFDFSSAQKNPSSHQFSLNSNSELHQFRGAITPEELSLCYLDPQGAIQGPYLGI
DIIAWFEQGYFGTDLPVRLSDAPDGSPFHELGDIMPHLKLKPGCASTTSPSAKLQLSDAV
GESLEGSTGTLASVEFKASAVREDQQRASSGFEAISNVSGQSRVPDHGFLGGMEYSDDRR
FQNVVTPDEEIIFPGRPGSSGNPLMRDVADFQRFAPNPSTNPAILNEFSDTGMHTHQDEI
VHPFGLSMSELRSNSNLRRAQSSNMASSMGDEFPAQVHAMDPYTEHDAALASHRSFDAVF
DQSHYAETWPEDYRKKPLTNPHIDLGSADTRHLFHRQPEFNDFDQQHLIFQKMQKECQQQ
NHLSHPFSHTMELGFEQIPSNLIELQFQRQQQLELQQRQQQLELQQRQQLELQQRRQLEL
QQRRQVELQRRQLEHQQQQRQFELQQQHHLLHQQQQQLCQYQMKLQQQQVLEQLLQHQMP
DLGYGQGKGDPLRENLLEQIQFRTRLAAELQQNSHNPRHLDLSLEQIIRAKIGQNNLQEP
QTDILDHLSQVKHGNILPSDLQFHLQQEQMQAQELSLARQQLGMDGESQVGWPRSIDEAG
QTFRNTTGHHQSKSTGFNASDFFLQQQRLSSHDEHLSHNKWNHALQEPHQGGFYEPSSMA
FDHPTSLPAVTPGMKLDNVNGHSQGPDSAEHLYMHSTDQLGSFSSNVSSHHRQVFGDIYG
SRAEMTESHLPGKQGQQENSWVEGGMQQLHLEAERKRNVSEVAGNSSFWTSAGGDEESSK
QVLMDLHQKMGLQSIRSSEDDYRHLISSSKSRESFWPITESFSLNDIPDQEATMNDSFME
KPQNLKSNSLLQDNHAMSLSGQLHHLGNSERLSLRSKSGALTEEPTFLSGIVDTSHTNHV
DNMFGDKSAMDKELAELDNRYGSKGMSAMARSVSHIEESFVEQAETAMDFANASSRHSSL
SSAGGNGGLHGYEMRLDKSTGEEVSIDRMPAILTRGVDNALHKRPPVSQALSSKDVLSDM
AFASHIKQKNRASLATSDERRNEPVENVAATLGGDNQISGKKEGRFRRTSSYNDAGITET
SFMDVLKKPVFTEAEAANAAALESSDGSLGGRSGKKKGKKGRQIDPALLGFKVSSNRIMM
GEILHLDE
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacggaaatctcctcgacgatctcctcctcctcctctctcccaagtcaaccgat
gaacgcctctcctccttcaaagatcgaggaggaattggtgaggacaaggctctgttgagt
ttgcctgatgactcaaaagatcaagtggctgcagacaacactatacctctttctccacaa
tggctttatgctaaaccggtggatgctaagtcgttgactactggggcatcaggggaaaca
cgtgcttcaaattctttgtcccatggaaactccattgataacaatttgaaagacaattgg
cgtttagatggatctcaagacaagaaagatcggaggaggattgctcctgatgttgaaagc
agccgccgttggcgtgaggaggagagggatacaggtttgcttggtagaaaagatcgcaga
aaagaagacaatcgtgctgattctgtttcagctagagatatatctgagactagaactttg
tcttcttcagatcgttggcatgacggcaatagccgcaattctgcgcatgaatcccgaaga
gacagcaagtggtcatctaggtggggtcctgaagataaagagaaggattctcgaacagat
aagagggcagatgttgagaaggatgatgctcacagtgacaaacaaaattttggtactgct
agccacccagcttctgagccagcttctgagcgtgagaacgattctcgtgataagtggagg
ccaacttctgagcgcgagaacgattctcgtgataagtggaggcctcgccatcgtaaggat
attcattctagtggacctgctgcatacaggagtgcacctggatttgggttagatagagga
cgtctggagagcccgaatgtgcggtttgctgctggaagaggaaggtccaacaatagtggg
aacttacaaattggcaggcatcttactgcttcttctattgggtctattcctctggataag
aatcatgcattctgctatccaaggggaaaacttcttgacatttaccgtaagcacaagact
cttccaagttttgataccataccagaagggatcgagcttgtgtctccactaacacaggaa
atttcaattaagccattggcttttgttgcacctgatgcagaggaagaggctttccttgga
gatatatggcagggaaaaattacaagcagtggagcactgaacaactcatttagagaaaag
aacgattcatcaagtaataccactgcaggctttggtgagggggctttaggtgagggggat
gagagtttctctgttaagactgaagaaattgcacactcttttggaaaaattactggtaat
gcttctggtcatggtactgtcgctgagacattagatacatcaatggctgaggaaaaggat
acacataaagatgataaacagaagcgtacaacaacaattgccagagcattgatggatggc
tttgcgcctgcagatttcaagaaagatgatcccagcagttttggggagagtggtctgagt
gacaacattatggagttaaaagcttttgaaaggcagccagtggaagatgtggcttttcag
aataaccttaagttggaggatattgagccagctacttcttttgagatggataaccagctt
cctgatgattcaagttctctatttgatttttcttctgcacagaaaaatccaagcagccat
cagttttccttgaatagcaatagtgagttacatcaattcaggggtgctatcacacctgag
gaactatcattgtgctatcttgatcctcaaggggcaattcagggaccataccttggtatt
gatattattgcatggtttgagcaaggatattttggaactgacctaccagttcgtttgtca
gatgctcccgatggatcacccttccatgagcttggtgatattatgcctcacctaaaactt
aaacctgggtgcgcttcaactactagtccatctgctaagttacagctatctgatgctgtt
ggagaaagcttggaagggagcacagggactcttgcttccgttgaatttaaggcttctgct
gtcagggaagaccaacagagggcttcatctggatttgaggccatctccaatgttagtggt
cagtcaagagttcctgatcatggttttctcggtgggatggagtattctgatgatcgaaga
tttcaaaatgttgttactccggatgaagaaattatctttcctggaaggcctggaagtagt
ggcaaccctttgatgagagatgttgcagactttcagcgatttgctcctaatccttctacc
aaccctgccatcttaaatgaattttcagacactggcatgcatactcatcaggatgaaata
gttcatccatttggcttgtcgatgtctgagcttagaagcaactctaatctgaggcgtgct
caatcatccaacatggcttcaagcatgggtgatgaatttccagcacaggttcatgctatg
gacccttatacagagcatgatgctgctcttgccagtcacaggtcctttgatgcagttttt
gatcaatcccattatgcagagacatggcctgaagattataggaaaaagccactcactaat
ccccacattgatctaggttccgcagacactcgacacttatttcacaggcagccagagttc
aatgattttgaccagcagcatctcatttttcagaagatgcaaaaagaatgtcaacaacag
aatcatttatctcatccgttctcacatactatggaactgggttttgagcaaatcccttct
aatcttattgaactgcaatttcaacgtcagcagcagctggagcttcaacagcggcagcag
cagctggagcttcaacagcggcagcagctggagcttcaacagcggcggcagcttgagctt
caacagcggcggcaggtggaacttcagcggcggcaattggagcatcagcaacagcagcga
cagtttgagcttcagcaacagcatcatttactgcaccaacagcaacaacagctttgtcag
taccaaatgaaactgcagcagcagcaggttctggaacagttgctgcagcatcagatgcct
gatcttggatatggtcagggaaagggagatccactgagagaaaacttgcttgagcagatt
caatttaggacacgactggcggccgaactgcagcagaattcacataatccaaggcacctt
gatctatcactggagcagataattcgagctaagattggccagaataatcttcaagaaccc
cagactgatatcttggaccacttatcacaggtgaagcatggtaatatactcccttcggac
ctgcagttccatcttcagcaagaacagatgcaggcgcaagagttatctttggcaaggcag
cagttaggaatggatggtgaaagccaagttggttggccaaggtccattgatgaagctggc
cagaccttcagaaatactactggtcatcaccagtctaagtctacaggatttaatgcttca
gattttttcctgcaacagcagaggctttcctcacatgatgaacatttaagccataacaaa
tggaatcatgctttacaggagccacatcagggtgggttttatgagcctagctctatggca
tttgaccatccaacatctctccctgctgtcactcctgggatgaagttggataatgtaaat
ggtcattcccaaggtccagattcagcagagcatctatatatgcattctactgatcaactg
ggttccttctcgtccaatgtctcttctcatcatcgacaagtgtttggtgatatttatggt
tctcgcgctgaaatgacggagagccacctccctggaaaacaagggcagcaagagaatagt
tgggttgaaggagggatgcaacagttgcatcttgaagctgaaagaaaaaggaatgtttca
gaagttgctggaaactctagtttttggacctcagctggaggagatgaggagagctcaaag
caagttttaatggatcttcaccaaaaaatgggtcttcagtctattcggtcatcggaagac
gattatcggcaccttatatcttcctctaaatctcgggaatccttttggccaatcactgag
tcgttctctttaaatgatattccagatcaagaagccaccatgaatgactcatttatggaa
aagcctcaaaatttgaaatcaaattctctgctgcaggataatcatgctatgtccttgagt
ggtcaattacaccatctaggaaatagtgaaagattgtccctaaggtcgaaatctggagca
ctaactgaagaaccaacattcttgtcaggcatagtagatacttctcatactaatcatgtg
gataacatgtttggtgataaatctgccatggataaagaattggcagaattggataacaga
tatgggtccaaaggcatgagtgccatggccaggtctgtttcgcacattgaagagagcttt
gttgaacaagctgaaactgccatggattttgctaatgccagtagcaggcatagttccctg
agcagtgctggtggtaatggaggcctacacgggtatgagatgagattagataaatcgact
ggtgaagaggtctctattgacaggatgcctgctattttaactagaggcgttgacaatgcc
ttgcataaacgcccaccggtgtcacaggccttatcttctaaggatgtcttgtcagacatg
gcatttgcttcacatatcaagcaaaaaaatcgggcaagccttgcaacttctgatgaaaga
aggaacgagcctgtagagaatgtagcagcaaccctgggaggtgataatcagatatctggc
aagaaagaagggcgttttaggaggacttcatcttacaatgatgctggtataacagagaca
tcatttatggatgtgctaaaaaagccagtttttaccgaggctgaagcagctaatgcggct
gccttggaatcatctgatggttcactgggtgggcgaagtgggaaaaagaaagggaagaaa
ggaaggcagattgatcctgctctccttggcttcaaagtttctagcaatcgcattatgatg
ggtgagatactacatcttgatgagtaa
DBGET
integrated database retrieval system
