Populus trichocarpa (black cottonwood): 7495838 Help Entry 7495838           CDS       T01077                                  Name (RefSeq) DNA repair protein RAD50   KO K10866   DNA repair protein RAD50 [EC:3.6.-.-] Organism pop  Populus trichocarpa (black cottonwood) Pathway pop03440   Homologous recombination pop03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:pop00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     7495838    03450 Non-homologous end-joining     7495838  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pop03032]     7495838    03400 DNA repair and recombination proteins [BR:pop03400]     7495838 DNA replication proteins [BR:pop03032]  Eukaryotic type   DNA Replication Termination Factors    MRN complex     7495838 DNA repair and recombination proteins [BR:pop03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     MRN(MRX) complex      7495838     BRCA1-C complex      7495838    NHEJ (non-homologous end-joining)     MRX complex      7495838 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_23 SMC_N AAA_15 AAA_21 Rad50_zn_hook SbcC_Walker_B AAA_29 AAA ABC_tran AAA_16 Motif Other DBs NCBI-GeneID:  7495838 NCBI-ProteinID:  XP_002300148 UniProt:  B9GFJ5 LinkDB All DBs Position 1:32998843..33013038 Genome browser AA seq 1316 aa AA seqDB search MSTVDKMLIKGIRSFDPENKHVITFLRPLTLIVGPNGAGKTTIIECLKVACTGELPPNAR SGHSFIHDPKVAGETETKGQIKLRFKTAAAKDVVCIRSFQLTQKASKMEYKAIESVLQTI NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESIGQDQEKTEILKV QSQELESNLQNLDAKIHHTEVTLKDMRKLQDQITIKTAERSTLFREQQRQYAALAEENED TDEELQEWKTKFDEKIASLESNICKLEREMNDMETKGSFLKQNINEYIREISRLQTEAEA HASLKNERDSNIQKMYTRHNLGPLPNAPFSDDVALNLTNRLKSRLVDLDKDLQDKKTSND TEVKRAENCYWDANERWKNTEAQKQAKVEIKNSILNRITEKEREHSSFEEQISHVNLSHI DEKEKNMRIEVERKTNQLAEREFESHIRQKQSELYGIEQQIKVLNREKDILAGDSEDRVK LSLKKVELENHKKKHRKIIDECKDKIRGVLKGRLPPDKDLKKEITQTLRALGLEFDDLNM KSREAEKEVNVLQMKIQEVNNNLSKQRKDMDSRKRFIESKLQSLDQLSFSVDLYLKALES SKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAAS SAEHMKVLSMESSNADTLFQQLDKLRMVYEEYTKIGKETIPLAEKNLSELTEELEQKSQA LDDVLGVLAQTKAEKDSVEALVQPVETADRLFQEIQTWQKQVDDLEYKLDFRGQGVRTME EVQSELSSLQGTKDNLHNEVEKLRDEQRYMENDLSHIQIRWHALREEKVTAANILRDVKK SEEELERLVEEKHQVELEEKHLAEAVGPLSREKEKLQGEHNELKVQLEREYEEQKKQLDN FKQEVDTLVRIASKIREYYNLKKGERLKEMQEKLSLSESQLQGCDARKQEILAELNDSKN AVRSQDNLRRSIEDNLNYRKIKAEVEELTREIESLEERILKIGGFSSFEAELAKLLQERE RLLSELNRFRGTMSVYQNNISKNKIDLKQVQYKDIDKRYFDQLIQLKTTEMANKDLDRYY NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVVMQT GDAELEMRGRCSAGQKVLASLIIRLALAETFCLHCGILALDEPTTNLDGPNAESLAAALL RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIEAQEIFD NT seq 3951 nt NT seq  +upstreamnt  +downstreamnt atgagtacagtagacaagatgctgataaaaggaatccggagcttcgacccggaaaacaaa cacgtcatcaccttcttaaggcctcttactctcatcgtcggccccaacggcgctggaaaa accacgataatagagtgcttgaaagttgcatgcaccggagagttgcctccgaatgctagg tctggtcacagtttcatccatgaccctaaggttgccggtgaaacggagacgaaggggcaa attaagctgcggtttaagaccgcggccgcgaaggatgtggtgtgtataaggtcatttcag ttgacacaaaaggcgtcaaaaatggagtataaagccattgagagtgtgcttcaaacgatc aatccacatactggagagaaagtctgccttagctatagatgtgctgatatggatcgagaa attcctgctttgatgggtgtctcgaaggccattctagaaaatgttatattcgtgcaccag gatgaagctaattggcctctacaagatccttctacgttaaagaagaaattcgatgatatc ttctctgctactcgatatacaaaagccttggaggtcatcaaaaagcttcacaaggatcaa gctcaagagataaagacatacaaactaaaattagagaatcttcaaaccttgaaggatgct gcatataagcttcgggaaagcattggtcaagatcaagagaaaacagaaattttaaaagtc caaagtcaggagttagaaagtaaccttcagaatttggatgcaaaaattcatcatactgaa gtaactctgaaagatatgagaaaattacaggaccaaataacaatcaagactgctgaaaga agcactttgttcagggagcagcagaggcagtatgcagctcttgctgaagaaaatgaagac actgatgaagaactacaggagtggaaaaccaagtttgacgaaaagattgcaagtttggaa tcgaatatttgcaaattggagagggaaatgaatgacatggagacaaagggttcttttctt aagcaaaacattaatgagtatatccgagagatcagcaggcttcagactgaagctgaggct catgcatccttgaagaatgaaagagattccaatatccaaaaaatgtatacaagacataat ctaggtcctcttcctaatgccccattcagtgatgatgttgctttgaacctcacaaataga ttaaagtcaaggttggtggatcttgataaggatctacaagataaaaagacatcaaatgat actgaagttaagagagcagagaattgctactgggatgccaatgaacgctggaaaaatacg gaggctcaaaaacaggctaaagtagagataaagaatagcattttaaatcgcattacagag aaggaaagggagcactcttcctttgaagaacaaatttcacatgttaatctttctcacatt gatgaaaaagaaaagaacatgcgaattgaggttgagagaaagacaaatcagctagctgaa agagaatttgaatcacacattcgacaaaagcagagtgagctgtatggcatagagcaacag attaaggttcttaatcgagagaaagacattttggctggagattctgaggacagagtgaaa ctgtctctaaagaaagtagagctggaaaaccataaaaagaaacatcgaaaaataattgat gaatgcaaggataaaatcagaggagtgctaaaagggaggcttcctccagataaggatttg aagaaggaaattactcagaccctaagggctcttgggttggagtttgatgacttgaatatg aaatcccgtgaagctgagaaggaggtaaatgtgttgcagatgaaaatacaagaagttaat aataacctttccaaacaacgcaaggacatggactctaggaagagatttattgaatccaaa ctccagtccttggatcaactgtcatttagtgttgatttatatctcaaagcattggagtcg tccaaggagaaaagagatgttcagaaaagcaagtacaatattgcagatggtatgcggcag atgtttgatccttttgaacgagttgcccgtgctcatcatgtgtgcccttgctgtgaacgc cctttctctgctgaagaggaagacgaatttgttaaaaagcaaagagtgaaggctgcaagt tctgcagagcatatgaaagtgttgtctatggaatcttcaaatgcagacactctttttcag cagttggacaagcttcgtatggtttatgaagaatataccaaaattggcaaggaaacaatt cctcttgctgagaaaaacttgagtgagctaactgaagagctggagcaaaagtctcaagcc cttgatgatgtgttgggtgttttagctcaaacaaaggccgaaaaagactcagttgaggcc ttggtgcaacctgttgaaacagctgataggcttttccaagaaattcagacttggcaaaag caagtcgatgatttagaatacaagcttgattttagagggcaaggtgttagaaccatggaa gaagtgcagtcagagctaagtagtttgcaaggcacaaaggataatttgcataatgaagtg gagaagttaagggatgagcaaaggtacatggaaaatgatttatcacatattcaaattcgg tggcatgctctgcgggaggaaaaagttacggcagctaatatattgcgtgatgttaaaaag tcagaagaagagttagaacgtttggtagaggaaaaacatcaagttgagctggaagagaag catttggcagaggctgttggtcctttatctagggagaaagaaaaattacagggcgaacac aatgagttgaaagtccaacttgagcgggaatacgaggaacaaaaaaaacagttagacaac tttaaacaggaggtggacacacttgttagaattgcatcaaagattagagagtattataat ttaaagaaaggtgaaagattgaaagaaatgcaagaaaaactatctttatccgagtcccaa cttcaaggttgtgatgctaggaagcaggaaattttagcagaactcaatgacagtaaaaat gcagtgcgaagtcaagataaccttagaagaagtattgaggacaacttaaattacaggaaa ataaaggctgaagtggaagagcttaccagggagattgaatcattggaagagagaatactg aagattggtgggttttcctcatttgaagctgaacttgcaaagctattacaagaaagagag agacttctttcagagttgaacaggttccgtggaacaatgtctgtttaccagaacaatatt tcgaagaataaaattgatcttaaacaggtgcaatacaaagatattgataagcgatacttt gatcagttaatccagctaaagactactgaaatggcaaacaaggacctggacagatactac aatgcacttgacaaggcactcatgcgcttccacacaatgaaaatggaggaaattaataaa atcattcgggaattgtggcaacaaacatacagaggacaggatatagattatattagcata cattcagattctgaaggtgctgggactcgttcttacagctacaaggttgtcatgcagaca ggtgacgctgagcttgaaatgagaggaaggtgtagtgctggtcagaaggtccttgcttca cttattattcggttggctttagccgagacattttgcctccactgtggaatactagctcta gatgaacctacaacaaacttggatggcccaaatgctgagagtcttgctgcagctctcctt agaatcatggaggataggaagggccaggagaattttcaactgattgtaattactcatgat gagcgatttgctcaacttatcggtcagcgacagcatgcagaaagatactatcgagttgca aaagatgatcatcagcatagcataattgaagcccaagagattttcgactga

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