Populus trichocarpa (black cottonwood): 7495848
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Entry
7495848 CDS
T01077
Name
(RefSeq) probable methionine--tRNA ligase isoform X1
KO
K01874
methionyl-tRNA synthetase [EC:
6.1.1.10
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00450
Selenocompound metabolism
pop00970
Aminoacyl-tRNA biosynthesis
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
7495848
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
7495848
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pop01007
]
7495848
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
7495848
Enzymes [BR:
pop01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.10 methionine---tRNA ligase
7495848
Amino acid related enzymes [BR:
pop01007
]
Aminoacyl-tRNA synthetase
Class I (U)
7495848
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
7495848
Prokaryotic type
Other AARSs
7495848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1g
tRNA_bind
Anticodon_3
tRNA-synt_1
Anticodon_1
tRNA-synt_1e
CoV_peptidase
Sublancin
Motif
Other DBs
NCBI-GeneID:
7495848
NCBI-ProteinID:
XP_024443810
LinkDB
All DBs
Position
1:complement(32759533..32765810)
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AA seq
800 aa
AA seq
DB search
MEDLNRTAPKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIY
ICGTDEYGTATETKAMEENSTPKQICDKYYAIHREVYKWFNISFDEFGRTSSPQQTEICQ
AIFKKLLENNWLSENSMQQLYCDTCERFLADRLVEGNCPTEGCNYDSARGDQCENCGKLL
NPTELINPRCKQCKNTPRIRDTNHLFLELPLLKDKLVHYIESTSVAGGWSQNAIQTTNAW
LKEGLKPRCITRDLKWGVPVPLEEFKDKVFYVWFDAPIGYVSITSCYTPDWEKWWKNPEN
VELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGN
DAKDTNIPVEVWRYYLLTNRPEVSDTLFTWSDLQAKSNNELLNNLGNFINRVLSFLAKPP
GSGYGSVIPDAPGAGSHPLTNKLAEEVGKYVEQYLEAMEKVKLKHGLKTAMSISSEGNAY
LQESQFWRLYKEDQPSCSIVIKTSLGLVYLLACLLEPFMPSFSVEVFKQLNMPPEQASLC
DEKGDMDKAKRPWEILPAGHKIGTPEPLFKELKIEEVEDYRKKFAGSQADRLEREEVEKA
SKLAEELKKKATVGGKKQQTKKPAGEAKSRGAVEPEISITRLDIRVGLIKKAQKHPDADS
LYVEEIDLGEGDCRTVVSGLVKYIPLEEMQNRKVCILCNLKPANMRGIKSEAMVLAASSS
DHTKVELVDPPQSAVVGERVTFPGFEGEPDDVLNPKKKVWETLQVDLQTNSDLVACYKDI
PLTTSAGVCKVATINNGSIR
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggaagatctcaatcggacggccccgaagctacctatcccgggaaagcgaaacatactg
ataaccagtgctttgccttatgtcaataacgtccctcatctcgggaacatcatcggctgt
gtgttgagtgctgatgtttttgctcgatactgtcgtcttcgaggatataacgcgatttat
atttgtggaactgacgagtatgggactgcgactgagactaaagccatggaggagaattcc
actcctaaacaaatttgtgacaagtattatgcgattcatagggaggtttataaatggttt
aatataagttttgatgaatttggacgtacgtcgagtccgcagcaaacggaaatttgtcaa
gcaatttttaagaaattgttagagaataactggctttcggagaactcaatgcaacagctg
tactgtgatacatgcgaaagattcttagctgatcgacttgtggaaggtaattgtccaacg
gaaggatgtaattatgattctgcacgaggagatcagtgtgaaaattgtggaaagcttttg
aatcctacagagttaataaatcccaggtgcaagcaatgtaaaaacacaccacgaatccgt
gatacaaatcacttgtttcttgagcttcctctactgaaggataaattagtacactatatc
gagagcacatctgtagctgggggctggagccaaaatgctattcaaacaacaaatgcatgg
cttaaagaaggattaaaaccacgatgcattactagggatctgaagtggggtgttcccgtt
ccacttgaagaatttaaggacaaggtgttctatgtttggtttgatgctcctattggatat
gtctccattacttcttgctacactcctgattgggagaagtggtggaagaatcctgagaat
gttgagctgtatcagtttatgggaaaagacaatgtgccattccacactgtgatgtttcct
tctacgcttcttggaacaggtgaaaattggactttgatgaagactataagtgtaactgaa
tacttaaattatgaagcaggaaagttttccaagagtaaaggtgtaggagtgtttggtaat
gatgcaaaggatacaaatattcctgtagaagtttggagatattatttgctaaccaatagg
cctgaggtgtctgacacactatttacatggtctgatttgcaagcaaaaagtaacaatgag
ttgctgaataatttgggcaactttattaaccgagttctgagctttcttgctaaacctcca
ggttcaggatatggttctgttatcccagatgctccaggtgcaggctctcatcccctgaca
aataaattggctgaagaagttggtaaatatgtggagcaatacctggaagccatggaaaag
gttaaattaaagcacggattgaaaaccgcaatgagcatttctagtgagggaaatgcatat
ctgcaagaaagccaattctggaggctttacaaggaagaccaaccttcttgttctatagtt
ataaagacttcattgggtctagtatatcttctcgcatgtttgttagaacctttcatgcca
tctttctctgttgaggtcttcaagcagcttaatatgccccctgaacaagcttcactatgt
gatgagaaaggtgatatggataaggcaaaaagaccctgggagatcctacctgctgggcac
aagattgggacaccagagcccttgttcaaggaactgaaaatagaagaagtggaggactac
aggaagaaatttgctggaagtcaggctgacagacttgagcgggaagaagttgaaaaggca
tctaagcttgctgaggaactgaagaaaaaagctacagttggtgggaagaagcagcagacc
aaaaaacctgctggtgaagccaaatcaaggggcgctgttgaaccagaaatctccatcaca
agacttgatattcgtgttggcctaattaagaaagctcagaagcatcctgatgctgattcc
ctgtatgtggaagaaatcgacttgggtgaaggagactgtagaacggttgtaagtggactt
gtcaagtatatacctcttgaggagatgcagaatcggaaggtctgcatcctttgcaaccta
aagcctgcaaatatgaggggcatcaagtcagaggctatggttctcgctgcttccagtagt
gaccacaccaaggttgaattggttgatccaccccaatctgccgttgttggagagagagtg
acattcccagggtttgaaggagaacctgacgatgtcctaaaccctaagaagaaagtctgg
gagacactacaggtggatctgcaaactaacagtgacctggtagcctgctacaaagatatt
ccactaaccacatctgctggtgtctgcaaggttgcaaccattaacaatggttccattagg
taa
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