Populus trichocarpa (black cottonwood): 7495985
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Entry
7495985 CDS
T01077
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7495985
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
7495985
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
RRM_10
DUF8400
Motif
Other DBs
NCBI-GeneID:
7495985
NCBI-ProteinID:
XP_024444931
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All DBs
Position
17:complement(9830730..9836412)
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AA seq
472 aa
AA seq
DB search
MSTSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCEPFGKIVNTKCNVGNNRNQAFVE
FAEQNQAIQMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDNPGNVLLVTIEGVE
AGDVSIDVIHLVFSAFGYVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLL
PEHVGSCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIDGPVQSTVGADGKKKEP
ESNVLLASIENMQYAVTVDVLHTVFSGFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKE
TLEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTIPDASFLTAQAPGLHTAPTTWQ
NPQAGSMYLGSNYATTAAAPAQVPPGQVAAWDPSMQAGGPGYSSVRGMYPGQTYPTPPAY
ASSALPPGSSPHSYSSPISPGVASMGMTHPGVQPNMRPGGASPPGQTPYYGR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgtccggacagccacaattccgatacacacaaacaccatcaaaggttttgcat
ctgcgaaaccttccatgggagtgcacagaagaagagcttatcgagctctgtgaacctttc
ggaaagatcgtcaacactaagtgcaatgtcggcaacaatcgcaaccaagccttcgttgaa
ttcgcagaacaaaaccaggcaatacaaatggtatcgtattatgcgtcgtcgtcggagcca
gcgcaggttcggggtaaaacggtgtatattcaatattcgaatagacatgaaattgtgaac
aataagagtccaggtgataatcctggaaatgtattgctggttaccattgagggtgttgaa
gctggtgatgtcagcatcgatgtcattcacttggtgttttctgcttttggctatgtgcac
aaaattgctacttttgaaaaggctgctggtttccaggcattaattcaattcactgatgct
gaaactgcatcttcagcgagaaatgccttggatgggagaagtatacccaggtacctgctt
ccagagcatgttggttcctgcaacttacgcatttcatattctgcacatactgatctcaat
atcaagttccagtcccataggagcagagactatacaaatccgtatcttcctgtgaatcct
actgcaattgacggacctgttcagtctactgtaggtgctgatgggaaaaagaaagagcct
gagagcaatgtacttcttgcatccattgagaacatgcagtatgctgtcaccgtggatgtt
cttcacacggtattttctggatttggtactgtccagaagattgctatatttgagaaaaat
ggtggaacacaggcactaattcagtacccagatgttgcgactgcagcagtagccaaagaa
actctggagggacactgcatttatgatggtggctattgtaagcttcatctatcatactct
cgtcatactgatctcaatgtaaaggcctttagtgataaaagtagagattacaccatcccg
gatgcaagttttctcacagcacaagctcctggcctccacactgctcccacaacttggcag
aatcctcaagctggttcaatgtaccttgggagtaactatgccaccacagctgctgctcct
gctcaagttcctcctgggcaagtggcagcttgggatccgagtatgcaggcgggtggacca
ggctattcatcagttcgcggtatgtatcctggtcaaacatatccaacacccccagcatat
gcttcctcagcactacctccaggttcctctccccattcatatagcagcccgatttctcct
ggtgtggcctccatgggaatgactcacccaggggtgcagccaaacatgcgacctggtggg
gcttcacctcctggtcagactccatattatggtcgatga
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