Populus trichocarpa (black cottonwood): 7496006
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Entry
7496006 CDS
T01077
Name
(RefSeq) U-box domain-containing protein 44
KO
K08332
vacuolar protein 8
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7496006
03029 Mitochondrial biogenesis [BR:
pop03029
]
7496006
Membrane trafficking [BR:
pop04131
]
Autophagy
Cytoplasm to vacuolar targeting (CVT) pathway
Other Cvt associated proteins
7496006
Other autophagy associated proteins
Micronucleophagy
7496006
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
7496006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
KAP
HEAT
RIX1
Adaptin_N
RTP1_C1
Motif
Other DBs
NCBI-GeneID:
7496006
NCBI-ProteinID:
XP_002297756
UniProt:
B9GM30
LinkDB
All DBs
Position
1:complement(1863069..1867113)
Genome browser
AA seq
845 aa
AA seq
DB search
MENSDSRSISEIESEQQASTEEAVSLAKNLEFDREVFAEFAVLLDKFTPILISINDNEKL
MDRPSVQKAVGSIEKELSRAKDLIEGACSRSPIKQIEVVTQELGRSLGLVLFASIDASTE
VKQSIAALHRELMNVKFDTSFTPSPSPSLSPSPSPCANHGPRPNKESGFVSEQDSFINEI
EEEKISLSIDDVVRHLKCGNDEEFRLALLVLGDLIRDQVIEKEWINDEDIIPILFNRLGS
SKPHNRLTTIQILRILALENDENKDKMTDAVCLSVLVKSLARDADEGREAVGLLSELSDI
SAVRRRIGRIQGCIVMLVTMLNGDDPTTSQDAAKLLVALSSNPQNVLHMAEAGYFKPLVH
CLKEGSDKSKILMATAVSRMELTDLCRASLGEDGAVEPLVKMFKSGKLEARLAALNALQN
LSNLTENIKRLISSGIVVPLLQLLFSVTSVLMTLREPASAILARIAQSATILVKQDVAQQ
MLSLLNLSSPVIQYHLLQALNSIASHSSASKVRRKMKENCAVQLLLPFLTESNTNTRTAA
LNLLYTLSKDSPEEFMEHLGESYLSKIVSIISSPESESEKAAAIGILSNLPVGNKKSTEA
LKKLHFLPILISLMSSGASSSTTWLEESISGILIRFTVPSDKKLQLFSAELGIIPILVKL
LSSESSVAKCRAATSLAQLSQNSLALQKSRKSRWICMPPSADTFCQVHDGYCVIKSTFCL
VKAGAVPPLIQILEGKDREADEAALNALATLLQDEIRESGSLFIAKTSGVQAIIRVLESG
TVKAQEKALWMLERIFRIEEHRSQYGESAQVVLIDLAQNGDPRLKSTIARVLAQLELLQA
QSSYF
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattctgatagcagaagcatttctgagattgaatcagagcaacaagcctcgaca
gaagaggcggtatcacttgctaagaacttggaattcgatagagaagtattcgctgaattt
gcagttctgcttgacaagttcacaccgattctcatatcaataaacgataatgaaaaactc
atggacaggccatcagttcaaaaggcagttggatccattgaaaaagagcttagtcgcgct
aaggacttaattgaaggagcttgttcaagatcccccatcaagcagattgaggttgttact
caagaacttgggagatcattaggccttgttctctttgcaagtattgatgcatccacagaa
gtcaaacaaagtattgcagcattacacagagaattgatgaatgtgaagtttgataccagt
tttactccaagtccaagtccaagtctcagtcccagtcccagtccttgtgcaaatcatggt
cctagaccaaacaaagaatcagggtttgttagtgagcaagattcttttattaatgaaatc
gaggaggaaaaaattagtcttagcattgatgatgttgtgcgacatctcaagtgtggaaat
gatgaagaattcaggcttgcacttttggtcttaggtgatttaattagggatcaagtaatt
gaaaaggagtggattaatgacgaagatattattccaattctgtttaatcgacttggctcg
agcaagcctcacaaccggttaaccaccatccagatactgagaattcttgctttggagaat
gatgaaaacaaggacaaaatgacagatgcagtctgtttgtcagtgttggtgaaatctttg
gcacgcgacgcggatgaaggaagggaagctgtaggactattgtcagaactctctgatatt
tctgcagttaggcgaaggattggaagaattcaagggtgtattgttatgttagtcaccatg
cttaatggggatgatccgactacttcacaagatgcggcgaagttgttggttgcactgtca
agcaatcctcaaaatgtgcttcatatggctgaggctggttactttaaacctctagttcat
tgtctgaaggaaggctctgataagagcaagatcctcatggcaacagcagtttcaaggatg
gagctcacagatctgtgcagagcctctcttggcgaagatggggcagttgaaccccttgta
aagatgtttaaatctggaaaacttgaagccaggttagctgctttaaatgcattacaaaat
ctatcaaacttgacagaaaatataaaacgtttaatcagttcaggcattgtagtacccctg
ctccagctactgttttccgtgacatctgtccttatgactctccgtgagccggcatctgca
atacttgcaaggattgctcaatctgcaactattctggttaaacaagacgtagcccagcag
atgctctcacttttgaacctgtctagtccggttattcagtatcatctcttgcaagctcta
aatagtattgcatcccactctagtgcatccaaagtaagaagaaaaatgaaggaaaattgt
gcagtccagcttcttttaccctttctgacagagagcaacaccaataccagaactgctgca
ttaaatttgctttacaccctttctaaagattcaccagaagagttcatggaacacctcgga
gaatcctatctcagtaaaattgtcagtatcatctcatcaccagaatctgaaagtgaaaag
gctgccgcaatcggcattttgagcaatcttcctgttggcaacaagaaatcaacagaagca
ctgaaaaaattacattttctgcccattctgatctcactaatgagttcaggcgcatcatca
tcaacaacatggttagaagagagcatctcaggcatacttattcgctttaccgttccttct
gataagaaattgcagcttttttcagcagaactagggattattcctatccttgtgaagttg
ctgtcaagtgaatcatcagtagccaagtgtagagcagcaacctcactagctcaactatcg
cagaactccctagcccttcaaaagtccagaaaatcgcggtggatatgtatgcctccttct
gcagacactttctgccaagtccatgatggctattgcgtcattaaaagcacattttgtttg
gtcaaggccggtgctgtccctccactgatccaaatattggaaggtaaagatagggaagct
gatgaagctgccctcaacgccctcgcaacgctcttgcaagatgaaattcgggagagtgga
agcctcttcatagccaaaacatctggtgttcaagccataataagagtgttggaatcagga
actgtaaaagctcaagaaaaggcactgtggatgttggagagaatttttagaattgaagag
catagatcacaatatggagaatctgcccaggtggtcctcatcgatcttgcgcagaatggt
gatccaagattgaaatcaacaattgcaagagtcttggcacagcttgagctattgcaagct
caatctagttacttctga
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