KEGG   Populus trichocarpa (black cottonwood): 7496084
Entry
7496084           CDS       T01077                                 
Name
(RefSeq) rhomboid-like protein 20
  KO
K25216  ubiquitin-associated domain-containing protein 2
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7496084
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   LMBR1L-GP78-UBAC2 complex
    7496084
SSDB
Motif
Pfam: UBA UBA_7 Rhomboid CUE UBA_RAD5A
Other DBs
NCBI-GeneID: 7496084
NCBI-ProteinID: XP_024458251
LinkDB
Position
6:2681106..2687234
AA seq 292 aa
MNGGPSGFNNAPVTRICVIASAIFSVFLGIKGGSNKLGLSYQDIFRNPRLWKLVLSVFAF
SSTPEMMFGLYLLYYFRVFERQIGSNKYSVFILFSVIVSLLFEVFAVTLLQDPLANLLTS
GPYGLIFASYVPFYFDIPVSTRFRVVGVHLSDKSFIYLAGVQLLLSSWKRSILPGICGIL
AGSLYRLNLFGIRKAKFPEFIASFFSRLSWPSTGSPRGATSRNVTGSAPSYAGRHVQRTY
PAPMAPSTEPSEDAIATLASMGFDRNSARQALVQARNDVNTATNILLEAQSH
NT seq 879 nt   +upstreamnt  +downstreamnt
atgaacggcggcccatctggtttcaacaatgcaccagttacaagaatatgtgttattgca
agcgctatctttagcgttttcttggggatcaaaggtggctctaacaagcttggattatcg
tatcaggatattttcaggaatccacgtctctggaagttagttttgtcagtttttgccttt
tcatctacaccagaaatgatgtttgggctatatcttctttactacttcagggtctttgag
agacagattggttccaacaagtactctgtctttattttgttctctgtgatagtctctttg
ctctttgaggtctttgctgtcacactccttcaagatcccttagccaaccttttgacatca
ggaccttatggtcttatatttgcttcatatgttcccttctactttgacattccagtatca
actcggtttcgagtcgttggagtccacctttctgacaagtctttcatatatctagctggt
gttcagcttcttttatcatcatggaaaagatcaattttgcctgggatatgtggtatcctt
gctggttccttgtatcgtctgaacctctttggcatccgtaaggcgaagttccctgagttc
atagcttcattcttctcacggctttcttggccatctacgggcagtccgcgtggagcaact
tctaggaatgtaacaggaagtgcaccatcctatgctggccgtcatgtgcagagaacctat
cctgctcccatggctccttccaccgagccatcagaggatgccattgctactctggcttct
atgggttttgataggaactcagctagacaggcacttgtgcaggctaggaatgatgtcaac
acagctacaaacatccttcttgaagcacagtcccactga

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