Populus trichocarpa (black cottonwood): 7496110
Help
Entry
7496110 CDS
T01077
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X2
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7496110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7496110
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
7496110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
ANAPC4_WD40
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
PRP4
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
eIF2A
Beta-prop_SCAP
PROPPIN
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
WD40_like
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
7496110
NCBI-ProteinID:
XP_002308919
LinkDB
All DBs
Position
6:complement(3101541..3105905)
Genome browser
AA seq
574 aa
AA seq
DB search
MAAEEENPALSNLPEESSAVVPDDELMIDNSSPIQPTPPIIPPVIPSSIPVLPSIAPIPI
VPPRPLAPLPIRPPATRPPGVQNGEMRTSDSDSDQEELSPTGTTPGSTGGYEISEASRLV
RERQQKAMQEFMMKKRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMLMAK
LDSEGQLEKLMKVHEEEEAASTAAAEDAEEEFVQYPFYTEGSKELLDARIDIAKYSISKA
ALRLQRARRKRDDPDEDEDAEIDWSLNQAESLSLNCSELGDDRPLSGCSFSCDGEMLATC
SLSGVAKIWSVPQVTKVSNLKGHMERATDVAFSPVHNHLATASADRTARLWNTDGSLLMK
FEGHLDRLARVAFHPSGKYLGTTSFDKTWRLWDIDSGVELLLQEGHSRSIYGIAFHHDGS
LAASCGLDALARVWDLRTGRSIMAFEGHVKPLLGISFSPNGYHLATGGEDNTCRIWDLRK
KKSLYVIPAHSNLVSQVKFEPQEGYYLVTSSYDMTAKVWSGRDFKHVKTLSAHEAKVTSL
DISADGRLIATVSHDRTIKLWSSRSNEKDAMEVE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgaagaggaaaatcccgctttgtcaaatttaccagaagaatcttctgctgta
gtccctgatgatgaactgatgattgataactctagtcctattcaaccaactccaccaatc
attccgccggtaatcccatcttcaataccagttttgccttctatcgctccaatacctata
gttcctccccgcccattagcaccgctccccatccgaccgcctgcaactaggccacctggg
gtgcaaaatggtgagatgagaactagtgactcagattctgaccaagaggaattaagtccc
actgggactaccccggggtcaactgggggttatgaaatttcggaagccagcagactagta
agagaacggcagcaaaaggcaatgcaggagtttatgatgaagaagcgtgctgctgctttg
gcagtgcctactaatgatatggcagttaggactcgtcttcgccggcttggtgagcctata
actcttttcggagaacgagagatggagagacgggacaggttgaggatgcttatggctaag
ttggattctgaaggacaattggagaagttgatgaaagttcatgaggaagaggaggctgca
tctactgcggcagcagaagatgccgaggaagaatttgttcagtatccattctacactgaa
gggtcgaaagagctcttggatgctagaattgatattgctaaatactccatttcgaaggca
gctttgcgtcttcaacgtgcaaggagaaaaagagatgacccagatgaagatgaagatgca
gagattgattggagtctgaatcaggcggagagtttgagtcttaattgcagcgagcttgga
gatgaccggccactctctggctgttccttctcttgtgacggagaaatgctcgctacctgt
tccttaagtggagttgctaaaatatggagtgtgcctcaagttacaaaggtttctaactta
aagggacacatggaacgtgcaactgatgttgccttctctcctgtgcacaatcatttggca
actgcctccgctgatcgaactgcaaggttgtggaacactgatggttctctcctgatgaag
tttgaaggtcatctagaccgtcttgctcgtgttgctttccatccatcagggaagtacttg
ggcaccacgagctttgataagacatggagactgtgggatatagattctggtgtggagctg
ctccttcaagaaggtcacagtcggagcatttatggaatagctttccatcatgatggatca
ttagcagcatcctgtggattggatgcactagcacgtgtttgggacctacgtactgggaga
agtataatggcattcgaaggccatgtcaagccgcttcttgggatcagcttttcacccaat
ggctatcatttagcgactggcggagaggataatacttgccggatatgggatttaaggaag
aaaaaatcattgtatgtcataccagcacactcaaatctcgtatcacaagtaaagtttgag
ccccaagaaggatactatctggttacatcatcatatgacatgactgctaaggtttggtct
ggccgagattttaagcatgtcaagacattatcagctcacgaagccaaagttacatctctg
gatattagtgcagatggacgtctaattgcgactgtctcacatgaccgaaccatcaagctg
tggtccagcagaagcaatgaaaaggatgctatggaggttgaatga
DBGET
integrated database retrieval system
