Populus trichocarpa (black cottonwood): 7496400
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Entry
7496400 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5 isoform X1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7496400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7496400
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7496400
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
7496400
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
FAIM1
Motif
Other DBs
NCBI-GeneID:
7496400
NCBI-ProteinID:
XP_002318423
UniProt:
B9I5C4
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Position
12:complement(1788739..1792120)
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AA seq
332 aa
AA seq
DB search
MDFDNIECVSSSDGLDEDEIHHHNLQHHHLHQFASPKPHNVNNNSNGIANVVGGPTVIAP
ATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVQNRCPTCRQELGDIRCLALEKV
AESLELPCKYYNLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSECSVVGDIPFLVAHLRD
DHKVDMHIGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFL
RFMGDEAEARNYSYSLEVGGNGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG
GDRKELKLRVTGRIWKEQQSPETGVCIPNLCS
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggattttgataatattgaatgtgtgtcatcatcagatggacttgatgaggatgagatc
catcaccataatttacaacatcatcaccttcatcaatttgcatcaccaaagcctcacaat
gtaaacaacaacagcaatggtattgccaatgttgttgggggtcctacagttattgctcct
gcaactagtgttcatgagctcctagaatgtcctgtttgtaccaattctatgtacccacca
attcatcagtgtcacaatgggcacacgctatgttccacctgtaaaacaagggtacaaaat
cgctgccccacatgtaggcaggagcttggagacattagatgtttggccctagaaaaggtg
gctgagtcactagaactgccttgcaaatattacaacttggggtgcccagagatatttcca
tattacagcaagctcaagcacgaggcaatttgcaacttcagaccatataattgcccctat
gctggatcagaatgctctgttgttggggacatccctttcctagttgcacatctaagggat
gatcacaaggtggacatgcacataggatgcactttcaaccatcgctatgtgaagtctaat
ccccgtgaagtggagaatgccacttggatgttgacggtcttccattgttttggtcaatac
ttctgccttcactttgaagctttccagcttggcatggcccctgtttatatggcattcctc
cgtttcatgggtgatgaggctgaggctcggaattatagctatagccttgaggtcggagga
aatggcaggaaacttatatgggagggtaccccgcgaagtgtccgagatagccaccggaag
gtcagggatagtcatgacggtctcataattcaacgaaatatggcacttttcttctctggt
ggggataggaaggagctgaagcttagagttaccgggaggatatggaaggaacaacaaagt
ccagaaacaggagtgtgcatacctaacctttgtagctaa
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