Populus trichocarpa (black cottonwood): 7496467
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Entry
7496467 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7496467 isoform X1
KO
K23288
syndetin
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7496467
Membrane trafficking [BR:
pop04131
]
Protein recycling
Others
EARP complex
7496467
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
EXOC6_Sec15_N
Motif
Other DBs
NCBI-GeneID:
7496467
NCBI-ProteinID:
XP_024464440
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All DBs
Position
9:856334..880125
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AA seq
1104 aa
AA seq
DB search
MQPNLFPFGSVFGNPFLLNADLGEEGVRFGFESSRLFFLVPFLLLQGGGGGGGGGGDSGG
MDLSKVGEKILSSVRSARSLGLLPPTVDRPEVPARAAAAAAAARVLAGMPPHQRFNLPSS
SEELRSIYGSRIQGHMVEELEEDFYEEDFDPVRHILEHVPSEENELMYFEEQATLRIAQL
DRVAERLSHHVMEHHEVMVKGMNLVREVEKDLKVANVICMNGRRHLTSSMNEVSRDLVVN
SNSKKKQALLDMLPVLTELRRALDMQIALESLVEEGNYCKAFQVLSEYLQLLDSFSGLSA
IQEMSRGVEVWLGRTLQKLDALLLGVCEEFKEESYITVVDAYALIGDISGLAEKLQSFFM
QEVLSESHSVLKIIVHEDLEIQMQNNRLTYSDLCHQIPESKFRTCLLRTLAILFRLMCSY
HEIMNFQLESKDLVFQTSDMKQDSLGSNGSPQSVDGMLGSSSIEESTTTSMYQDCNFDVD
ETKSNGGEAPSSESPWYHLRKEATTFVSQTLQRGRKNLWQLTTSRVSVLLSSAVFSSMSV
HQFLKNYDDLNVFILAGEAFCGVEAIEFRQKLKAVCENYLLAFHRQNIHALKMVLEKESW
LKLPPDTVQAISFAGLVGDGAALIVPSHDNSSNAKLHHSNKSVKSVDANSKKSGFSSWIR
SGNPFSPKLIPTSVDGHSSSLLNGATAVEYDEHANDTVSPQGNGASHKNGMPVSEDENED
LLADFIDEDSQLPSRISKPKAPKSNSSHCKTDEISAQTGSSLCLLRSMDKYARFMQKLEI
VNVEVFKGICQLFEIFFYFVFETFAQQTSNSSGKSDSLKYRLKTAISRITQDCDQWIKPQ
LTPVSSSSPTSSSTHIHGDVTPASPSNHLLATSFGLKERCAAADAISLVAQILHRSKTHL
QSMLLQNNPAIVEDFFVILVDSVPDLTEHIHRTTARLLLHINGYVDRIANAKWEVKELGL
EHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDRLLEYGLEIVAETLIEGLSRVKRCSNEGR
ALMSLDLQVLINGLQHFVHVNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYRKNQIVG
LINLVATMKGWKRKTRLEVIEKIE
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgaatctgttcccattcggtagcgtattcgggaacccgtttttgttaaatgct
gatttaggagaagaaggtgttcgttttggatttgagagttctagattgttctttttggtc
ccctttttgttgttgcaaggcggaggcggaggcggaggcggaggaggagacagcggcgga
atggatttatcaaaagttggcgagaagattttgagctctgttcgctctgctagatctctt
ggtcttttgcctcccaccgttgatcgcccggaggttccagcccgagctgcagcagctgct
gctgctgctcgtgtgcttgcaggaatgcctcctcatcagcggtttaatcttccttcaagt
tctgaagaactacgatcaatatacggaagcagaatacaaggtcacatggtggaggagctg
gaggaagacttctatgaagaggattttgatccagttaggcatattctagagcatgttcca
tctgaagaaaacgaattaatgtattttgaggaacaggccactcttagaatagctcaacta
gatagagtagcagaacgtttatcccatcatgttatggagcatcatgaagtaatggtgaag
gggatgaatttggtgagggaagtagagaaagatttaaaggttgcaaatgtcatctgcatg
aatggtagaaggcacctgacttcatcaatgaatgaggtttcaagggatcttgtagtgaat
tctaattccaaaaagaaacaagctctcctggacatgcttccagtattaactgagcttcgt
cgtgcattagacatgcaaatagcacttgaatccctggttgaagaaggaaattactgcaag
gcgttccaagtcctatctgagtatttgcagctattagacagtttctcagggctttcagca
atacaggagatgagccgtggggttgaggtttggttggggagaacccttcaaaagctggat
gcacttttgctgggagtgtgcgaggagttcaaggaggagagttacataacagtagttgat
gcatatgctttaattggagatatctctggtcttgctgaaaagttgcagagcttcttcatg
caggaagttttatcggaatcccactctgtgttgaagattattgtacatgaggacctggaa
atacagatgcagaacaatagacttacctacagtgatctatgccatcagatacctgaatct
aagttcaggacgtgtttattgagaacattagctatcttattcaggttgatgtgttcctat
catgaaataatgaacttccaactggagagtaaggatttggtatttcaaacatctgatatg
aagcaagattccttaggaagtaatggatctcctcaatctgtagatggaatgcttggttca
tcttctatcgaggaatctacaacaacttctatgtatcaagattgcaattttgatgtagat
gaaactaaaagtaatggtggtgaagcaccaagcagtgaatccccttggtatcatctgcga
aaagaggcgacaacatttgtttcacaaactcttcagagaggacgaaagaatctttggcag
cttacaacaagcagagtatcagtattgctttcttctgcagtttttagctctatgagtgtg
caccaattcttgaaaaattatgatgatttgaatgtattcatcttggctggggaagccttc
tgtggagttgaagcaattgagttcagacagaagttgaaggctgtatgcgagaattatttg
ctggcatttcatcggcaaaatattcatgcactcaaaatggtattggaaaaggaaagttgg
ctgaaattgccaccagatactgtacaagcaattagttttgctgggcttgttggtgatggg
gcagccctgatagttccatctcatgataactcctctaatgcaaaattgcatcattctaac
aaatcagtgaaatctgttgatgccaatagcaagaaaagtggattttcctcttggattaga
agtggaaatccattttcgccaaaattaatccccacttcagtagatggtcacagttcttcc
ctgcttaatggggcaaccgccgttgaatatgatgaacatgcaaatgatacggtgtctccc
caaggtaatggtgcaagtcataaaaatggaatgcccgtttcagaagatgaaaatgaagat
ctacttgcagacttcatcgatgaggacagtcaactcccaagtcgaatttcaaaaccaaaa
gctcctaaaagtaactcttcacattgtaaaactgatgaaatatctgcacagacaggatca
tctctttgtcttctcaggtcaatggacaaatatgcaaggttcatgcagaaactagaaata
gtaaatgttgaggtttttaagggtatatgccagttatttgagattttcttctattttgtg
tttgaaacatttgctcagcagacctctaattcaagtggaaaatctgactctctcaaatat
cggctgaagacagccatatccagaattacacaagattgtgaccaatggataaaaccccag
ctgacccctgtttcatcctcttcacccacatcttcgagcacacatattcatggagatgta
acacctgctagtccttcaaatcatttgctagccacatcctttggtctcaaggaaagatgt
gctgctgctgatgccatatctcttgttgctcaaatattacacagatctaaaactcatctt
cagtcaatgcttcttcaaaataatccagctatagtggaagatttttttgtcatactggtg
gattctgtacctgatcttacagagcacatacacaggacaactgcaagattacttcttcat
atcaacgggtatgttgatcggattgctaatgctaaatgggaagtaaaagagcttgggcta
gagcacaatgggtatgttgatttactgttgggagaatttaagcactataaaacgaggctt
gcacatggtggtattcacaaagaggttcaagaccgccttttagaatatggtctcgaaatt
gttgctgaaaccctcattgaaggtctatcacgggtgaagaggtgtagtaatgaaggacga
gcccttatgtcattagatcttcaggtattgatcaatggcctacaacattttgtccatgta
aatgtcaagccaaaattacaaatggttgaaactttcataaaggcttactatcttccagaa
actgagtatgtccactgggctcgagctcacccggaatacagaaaaaatcaaattgttggg
ttgatcaacctcgttgctacaatgaaaggttggaagaggaaaaccaggttggaagtcata
gagaaaatcgagtga
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