KEGG   Populus trichocarpa (black cottonwood): 7496468
Entry
7496468           CDS       T01077                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04142  Lysosome biogenesis
pop04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    7496468
   04148 Efferocytosis
    7496468
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    7496468
Membrane trafficking [BR:pop04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    7496468
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin Beta-prop_THOC3 Beta-prop_WDR3_1st VPS18_solenoid_2nd WD40_WDHD1_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_IFT122_1st WD40_Prp19 zf_RING_Vps8 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_EML_2 TPR_YpiA Beta-prop_WDR3_2nd zf_RING_Vps8_fungal Beta-prop_HPS5 EIF3I WDR90_beta-prop_4th zf-RING_2 ANAPC4_WD40 VPS18_RING_C Beta-prop_WDR11_2nd PEP5_VPS11_N CENP-B_dimeris zf-C3H2C3
Other DBs
NCBI-GeneID: 7496468
NCBI-ProteinID: XP_002313553
UniProt: A0ACC0SFN0
LinkDB
Position
9:complement(816588..824842)
AA seq 952 aa
MTPITSENGVDGDDEREEDDEEDEEQEEEEEEEQEEEPRLKYQRMGGSIPTLLSSDAASC
IAVAERMIALGTLDGTVHILDFLGNQVKEFAAHTAVVNDLSFDVEGEYIGSCSDDGTVVI
NSLFTDEKVLRFEYHRPMRAIALDPGYSRKTSKRFVAGGLAGQLCFNSKKWLGYRDQVLH
SGEGPIHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDT
LLVIGWGTFVKIASIRANEQKGANGTYRHVPMSSMNQVDIVASFQTTYYISGIAPFGDSL
VVLAYIPVEEDGEKECSSTISSRQGNAQRPEVRVVTWNNDELATDALPVHRFEHYKAKDY
SLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLEHGWHEKALEA
VEAGQGRSQLIDEVGSNYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLP
VLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLATVKSWPPVIYSALPVISAIDSQL
NTSSMTDALKEALAELYVIDGQYEKAFSLYADLMKPDIFDFIEKHDLNDAIREKVVQLMM
LDCKRAVPLLIQNKDLISPPDVVSKLLNASNKCDSKYFLHLYLHALFEANPHVGKDFHDM
QVELYADYDLKMLLPFLRSSQHYTLEKAYDICVKRDLLREQVFILGRMGNSKKALTVIIN
KLGDIEEAVEFVTMQHDDDLWEELIRQCLHKPEMVGVLLEHTVGNLDPLYIVNMVPNGLE
IPQLRDRLVKIITDYRTETSLRHGCNDILKTDCVNLLIKYYKEARRALCLSNEEEARVKR
DGRGDSQAIWRTVGARAMEVKSKTRGDTRCCMCFDPFSILDVSVVVFFCCHAYHMSCLMD
SMHTVSGKKGSGATSRMSEYDYDNNDEDDYDEENNDSGVIRLRCILCTTAAG
NT seq 2859 nt   +upstreamnt  +downstreamnt
atgactccaattacgtcggagaatggcgttgacggcgatgacgagcgagaagaagacgat
gaggaagacgaagaacaagaagaagaagaagaagaagaacaagaagaggaaccgagactc
aagtaccaaagaatgggaggtagcatacctacccttttatccagtgatgcggcgtcgtgt
atagctgttgccgaacgtatgatcgctcttggaactctcgacggcaccgttcacatcctc
gatttcctcggcaaccaggttaaggaatttgcggcacatactgcggtggttaatgatctt
agctttgatgtggaaggagaatatataggaagttgttcagatgatggcactgttgtaatt
aatagtcttttcaccgacgagaaggttttgaggtttgaatatcatcggccgatgagggca
atcgctttagaccctggatattctagaaaaacatctaaaagatttgttgctggtgggtta
gctggtcaattgtgttttaattccaaaaaatggctaggctaccgcgaccaggttttgcac
tctggtgaaggtccaatacatgctgtgaagtggagaacgagtctcattgcgtgggctaac
gatgcgggtgtgaaagtttatgatgccgctaatgatcaaagaataacttttattgaaaga
ccgcgggggagtccgcgtcctgagcttttgctccctcatttggtttggcaggatgatact
ctcttggttattgggtgggggacgtttgtgaaaatagcatcgataagagctaatgagcaa
aagggtgccaatgggacatataggcatgttccaatgtctagtatgaaccaggtggatatt
gtggcttcttttcaaaccacctattatatttcaggaattgctccgtttggtgattctttg
gttgttctagcttacattcctgttgaagaagatggagagaaggaatgtagtagcaccatt
tcatcaagacagggcaatgcacagagaccagaagtacgtgtagttacatggaataatgat
gaacttgcaacagatgccctacctgtacatcgttttgagcattacaaggcgaaggactat
tcccttgctcatgctcctttctcaggtagcagctatgctggtggtcaatgggctgctggc
gatgaaccattatactatatcgtatccccaaaggatgtggtgattgcaaagcctagggat
actgaagatcatattgcatggcttctagaacatggttggcatgaaaaagcattagaagca
gttgaagcaggtcagggcaggagtcaactcattgatgaggtgggatccaattatcttgat
catttgattgtggaaaggaaatatggtgaagctgcatctttgtgtcccaaattgttgcga
gggtctgcttctgcttgggagagatgggttttccattttgctcatttgcgtcagcttcct
gtgttggtcccatacatgccaacagaaaacccaagacttcgtgatactgcctatgaggtt
gctcttgtagctctggcaacaaatccgtcttttcataaagatctcctggcaactgtcaaa
tcttggccacctgtgatttattctgcattgcctgttatatctgccatagattctcagcta
aatacttcttcaatgactgatgcactcaaggaggcactagcagagttatatgtaatcgat
gggcaatatgagaaagccttttcactttatgctgatcttatgaagccggatatatttgat
ttcattgaaaaacacgacttaaatgatgccatccgcgaaaaggttgtccaactgatgatg
cttgattgcaagcgtgcagttcctctattgatccagaacaaggacttaatttctcctcct
gatgttgtctccaaactgttgaatgccagcaataagtgtgattcaaaatatttcttacat
ttatatcttcatgcattatttgaagcaaatccacatgttggaaaggattttcatgatatg
caggtagaactttatgcagattatgatctgaaaatgctacttccttttctccggagcagc
caacattacaccctcgagaaggcatatgacatttgtgtcaaaagagatctgttaagagag
caagtcttcatacttggaagaatgggaaactcaaaaaaggccctaactgtcatcataaac
aaattaggggacattgaagaggctgtagaatttgtaactatgcagcatgatgatgatctt
tgggaagaattaattaggcaatgtcttcacaaacctgaaatggtaggggtattgttggag
cacaccgttggcaatcttgatcctctatacattgtaaatatggtccccaatggcttggaa
atacctcagcttagggatcgtcttgtcaaaattatcactgattacagaactgaaacgtct
ctgagacatgggtgcaatgatattctcaagactgattgtgtaaatctcttgatcaaatat
tacaaagaagcaagacgggctctttgcttaagcaatgaagaagaagctcgagtgaaaagg
gatggcagaggggattctcaagcaatttggagaacagtaggtgcaagagccatggaggtt
aagtcaaaaactaggggagacacaagatgttgcatgtgctttgatcccttctctatacta
gatgtatcggttgtcgtattcttttgctgtcatgcttatcacatgtcttgtcttatggat
tccatgcatactgtaagtggaaaaaaagggagtggagccacttccaggatgtcagaatat
gactatgataacaatgatgaggatgactacgatgaggaaaacaacgattctggtgtgatt
cggttgagatgcatcttatgtactactgctgcaggttga

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