Populus trichocarpa (black cottonwood): 7496628
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Entry
7496628 CDS
T01077
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 2 isoform X1
KO
K11844
ubiquitin carboxyl-terminal hydrolase 16/45 [EC:
3.4.19.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
7496628
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7496628
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7496628
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
7496628
Peptidases and inhibitors [BR:
pop01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
7496628
Ubiquitin system [BR:
pop04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
7496628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
Ribosomal_L37ae
Motif
Other DBs
NCBI-GeneID:
7496628
NCBI-ProteinID:
XP_024445120
LinkDB
All DBs
Position
17:4322993..4327780
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AA seq
1000 aa
AA seq
DB search
MGKRANKKKARPPQKEKRVAGHSPNIVPEQANPNVEIVDGVTAVKERKLCSHFDKGFDAN
KLSDKIRSLDSLRCEDCREGVGDRKGAKGRGKQAKKKGSGSVDSKSQSKAIWVCLECGHL
ACGGVGLPTTAQSHAVRHSKQSRHPLVFQWENPQLQWCFPCNTLIPVEKTEGNGEKKDSV
FEVVKTIKAQSFEQSSVDAVDVWIGRGSILSELNAEGTEATSSEGRSGHVVRGLVNLGNT
CFFNSVMQNLLSMNKLRDYLNEEASLGPLSIALKKLFTDLQAEASLRNVINPKSFFGSVC
SKAPQFRGYQQQDSHELLCCLLDGLSTEELIVRKRRNASKEDGIPPKHGPTFVDSAFGGR
ISSTVCCVECGHSSIMHEPFLDLSLPVPMKKPPIKKVQPVSRAKKTKLPPKRGGKVQPKV
NKNMDSVPAQNISNPSVHSESSCQTQSSSDNTLAPDSTVPSTAVSESGIASQNSMAGIES
DSKQAVETTMEQTASSFEDFWMDYVGPETTSDEHDLTSENNDLAAGWQCGDKFDIPNDGL
METCQASSIDGEPNQKPESSSVNPWEEEVPFQVQSSEVLLLPYREEGYTDGEIMKGEAEA
SSSFVGCEQDEAEFDGIGDLFNEPEVSAAPVAGPSLPNEVAGPVFIAGIGSESDPDEVDD
TDSPVSIESCLSHFVKPELLSNDNAWECENCSKILQQQRLDAKKKQAKISSKTLLNGGET
QIQSDSVSLYKDISYASEVRNFQNGDGIPNNLLNSTPEVFDSGNDSSNKKFIQAEIVQTE
MEPFISQSEERKYEMNVSHSSGYYESCNGETLSGPPVDSCSVDETRGTGYTMAKDEQTGS
NFSGTCESDVNEDEDKTSKKLNVKRDATKRVLIDKAPPILTIHLKRFSQDARGRLCKLSG
HVTFRDVLDLGPYMDPSIYRCVDTERYVYRLLGVVEHLGTMRGGHYIAYVRGDERNKGKA
DKEQGGSVWYYASDAHVREVSLEEVLRCDAYLLFYEKVSN
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaagggctaataagaaaaaggctcgcccaccgcagaaggagaagcgggtcgct
ggccattctcccaatattgtgcctgaacaagcaaatcccaatgttgaaattgttgacgga
gttacagcagtgaaagagagaaaattgtgttctcactttgacaagggttttgatgcgaac
aaattgtcggacaaaattaggtctttggattctcttaggtgtgaggattgtcgagaaggt
gttggtgataggaagggggctaagggaaggggtaaacaagctaagaagaaaggaagtggt
tcggttgattcaaaatcccagtcgaaagccatttgggtctgtttagaatgtgggcattta
gcctgtggaggggttggtttgccaacgactgctcagagccatgcagttcgtcattccaag
cagagtcgtcatcctttggtcttccaatgggaaaaccctcaacttcaatggtgcttccca
tgtaatacactaattccagttgagaaaacagagggaaatggtgagaaaaaagattcagta
tttgaggttgtaaagacgatcaaggcgcaatcatttgaacagtcatcagtggatgccgtg
gatgtttggattggaagaggcagtattcttagtgaacttaatgcagaaggcactgaggca
actagttcagagggaagaagtggtcatgtggtgagaggcttggttaatcttgggaacact
tgcttctttaattcagtcatgcagaatcttctatctatgaacaagttgcgtgactactta
aatgaagaggcatctcttgggcctttatcaattgctttaaagaagctatttactgatcta
caagctgaggccagtttaagaaatgtaatcaatccgaaatctttttttgggtcggtctgt
tccaaggctccccagtttaggggttatcagcagcaagatagtcatgaattgctgtgctgc
ttacttgacgggctttctactgaagagttgattgttagaaagcgaagaaatgcttccaag
gaagatggcattcctccaaaacatggtcctacgtttgtggattctgcttttgggggtcga
atttctagcactgtttgttgtgtagaatgtgggcactcctcaataatgcatgagccattt
ctagatctctcacttccagttccaatgaagaaacctccaattaaaaaagtccaacctgtc
tctcgagcaaagaaaacaaagctgccaccaaagagaggggggaaggttcaaccaaaggtt
aacaaaaatatggattcagtgccagctcaaaatatatcaaacccatcagtccatagtgag
tcttcatgccaaacacaatcttcttcagataacactctagcaccagattcaactgttcca
tcgactgcggtcagtgaaagtggcatagcttcacagaattcgatggctggtattgaatct
gatagtaagcaagctgttgagacaacaatggagcaaacagcaagttcatttgaagacttc
tggatggattatgtcggaccggaaactacatcagatgagcatgatcttacttcagaaaat
aatgatcttgcagcaggttggcaatgcggggacaaatttgacattcctaatgatggctta
atggagacttgccaggcatcttcaattgatggggagccaaatcaaaaaccagaatcttct
tctgttaatccttgggaagaggaggttccatttcaagttcaaagctctgaagttcttctg
cttccgtacagagaagagggctatactgatggggagataatgaaaggagaagctgaggct
tcctcatcgtttgtgggctgcgaacaagatgaagcggaatttgatggcattggtgactta
ttcaatgagcctgaggtttcggcagctcctgttgcagggccctctttacctaatgaagtt
gctggaccagtttttatcgcaggaattggcagtgagtctgatcctgatgaagttgacgat
actgattctccagtgtctatagagagttgtttgtctcattttgtaaagccagaacttctc
tccaatgataatgcttgggaatgtgagaactgttcaaaaatcctgcaacagcaaaggttg
gatgcaaagaagaagcaagctaaaatatcttcaaaaactttattaaatggaggtgagaca
caaatacaaagtgattcagtgagtttatacaaggacatctcatatgcctctgaggtcaga
aactttcagaatggagatggtatccctaataaccttctcaactccacacctgaagtcttt
gattcaggtaatgattcctcaaataaaaaattcatacaagctgaaattgttcagacagag
atggaaccgtttatttctcaaagtgaagagaggaaatatgagatgaatgtttcacatagc
tccggttactatgaatcatgtaatggagaaactttgagtggtccacctgttgattcttgt
agtgttgatgagacaaggggtactggatataccatggctaaagatgagcagactggctcc
aacttctctggaacctgtgagtcagatgtgaatgaggatgaggataaaacttcaaaaaaa
ctgaatgtaaagagggatgcaactaagagggtccttattgataaagcaccgccgattcta
accattcatttgaagaggttcagtcaagatgctcgtggtcgtttatgtaaattgagcggc
catgttaccttccgagatgtacttgatcttggaccttatatggatcccagcatttacagg
tgtgttgacacagagagatatgtatatcgcctgctcggggtggtagagcatttaggaaca
atgaggggaggccactatattgcatatgtcagaggagatgagaggaacaaaggcaaggct
gacaaggaacaggggggttctgtgtggtattatgccagtgacgcccatgtgcgtgaggtt
tctctggaagaagttctgcgttgcgatgcttatttattattttatgagaaagtatcaaat
tga
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