Populus trichocarpa (black cottonwood): 7496643
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Entry
7496643 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
pop04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7496643
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
7496643
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
7496643
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7496643
03036 Chromosome and associated proteins [BR:
pop03036
]
7496643
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
7496643
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
7496643
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
7496643
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
B56
DUF5982
TetR_C_16
Motif
Other DBs
NCBI-GeneID:
7496643
NCBI-ProteinID:
XP_002323997
LinkDB
All DBs
Position
17:complement(7581958..7587189)
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AA seq
524 aa
AA seq
DB search
MIKQILNRLPKKSSKSADSRDGSGTSTSSSNASTSSRNSDLVSNRYGSLSAASLPDFNSG
PNLGSGYGNKLSQAVNSKLNGNQPIPYEALPSFRDVPNSEKPNLFIRKLNLCCIVFDFNN
PTKNLKEKDIKRQTLTELVDYVSSANGRFSETVMQEIVKMLSVNLFRTLTSPPRENKVLE
AFDLEEDEPLMDPAWPHLQVVYEFLLRFVASTETDAKLAKRYVDHSFVLRLLDLFDSEDP
REREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA
LPLKEEHKLFLVRALIPLHKPKCLPMYHQQLSYCITQFVEKDCKLADTVIRGMLKYWPIT
NSSKEVMFLNELEEVLEATQPADFQRCMVPLFCHIRCCLCSLHFQVAERALFLWNNDHIE
NLIKQNRRVILPIIFPALERNARQHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQKEE
SRENEIKSKREATWKRLEEIAAMKAASNEPVLIXPKITRRTPSG
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgattaaacagatactcaataggctcccaaagaagtcgtctaagtcagccgatagtcgt
gatggaagtggaacatctacctcctcatcaaatgcttctacaagctcaagaaacagtgat
ctagtcagtaaccgatatggaagcttgagtgctgcatctctgccagattttaattcaggt
ccaaatttaggatcaggttatggcaataagctttcacaagctgtgaattcaaagctgaat
gggaaccaacccattccttatgaggccttgcctagtttcagagatgttcccaattctgag
aagccgaacttgtttatcagaaagctaaacttatgttgcattgtgttcgacttcaataac
cctacaaagaaccttaaagaaaaagatatcaagcgacaaactttgacagagcttgtggat
tatgtttcttcagccaatgggaggttctcagaaactgtaatgcaagagattgttaagatg
ttgtctgtaaatttgtttagaacactcacttctcctcctcgtgagaataaagttttagaa
gcttttgatttggaggaagacgaacctttgatggaccctgcatggcctcatttacaagtt
gtttatgaatttcttttgaggtttgtggcgtcgactgaaactgatgcaaagttagcgaag
aggtacgttgatcactcatttgttctcaggttgttagatctttttgattcagaggatccc
agagagagggagtatctgaaaacagttttgcatcgtatatatgggaaattcatggtgcat
cggccattcatcaggaaagcaattaataacatcttctatcgctttatttttgaaactgag
aagcataatgggattgcagagctattagagattctgggaagtataatcaatgggtttgct
ctgcctctgaaagaagagcacaagcttttccttgttcgagctctcattccacttcacaaa
ccaaaatgcttgccaatgtatcaccagcaattatcatactgcattactcaatttgtggag
aaagactgcaagcttgctgatactgttatacgggggatgctgaagtattggccaatcaca
aatagttcgaaagaggttatgttcttaaatgagttggaggaagttttagaagcaacacaa
ccagcagatttccagcgctgtatggtgcccttgttctgccatattcgctgttgcttgtgt
agtttgcattttcaggtggcagagagggctctgttcttgtggaacaatgatcacattgag
aacctaatcaaacagaatcgcagagtcatactgccaatcatcttcccggcattggagaga
aatgcaagacagcactggaatcaagcagtacaaagcttgacactgaatgttcgcaagatc
ttttctgatatcgacccagaactctttgaggagtgtttactcaagtttcagaaagaggaa
tcacgagagaatgagattaagtcgaaacgtgaagctacatggaaacgcttggaggagatt
gctgcaatgaaagctgcaagtaatgagccagtgctcatcntccccaaaatcacgaggcgg
acaccatctgggtag
DBGET
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