Populus trichocarpa (black cottonwood): 7496841
Help
Entry
7496841 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7496841
KO
K11790
denticleless
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7496841
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
7496841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
MIOS_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR11_1st
Beta-prop_SCAP
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_SPT8
Beta-prop_IFT140_1st
DUF2415
Beta-prop_Nup120_160
WDR54
Motif
Other DBs
NCBI-GeneID:
7496841
NCBI-ProteinID:
XP_002300052
LinkDB
All DBs
Position
1:35662868..35666635
Genome browser
AA seq
503 aa
AA seq
DB search
MERSSRSKSLFRDMRSRELGGFRKRRFITQMGSDFTEMGSVTVEHNGEETPPLSVSFCKT
SKYSHILAVSDEDGYVSMFDTRTEFPSEKARISDWVAHQNAIFDVCWIKEDTNILTASGD
QTIKVWDAQEKKCTGILMGHTGSVKSLSPHPTNSDLLISASRDGSFAIWDLRCKTTSKTR
CSEAHVAPAAMVQGAHLSSRAKRVRRGKAASMSITSVLYLKDEVSIATAGAADSIVKFWD
TRNLKVQVTQASPNIKSSTEKERRLHGISSLSQDLNGVFLTATCMDNRIYLYNVLQLDKG
PMRSFSGCRIESFYVKSTISPDAAHILSGSSDGNAYIWQVNKPDVDPITLKTHDGEVTAV
DWCPSEVGKIATSSDDFTVRIWNINSSYCSSTTRSPSAIRRRVMAIPREECRELLMNDER
IDPTKVPDNLLPSDEVFNQNNPPIPITMPTISTPEAHKKKFSLDSDSKETFEKTPEAAMK
SPSSVLNPPSSLKRTIRDYFLAA
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggagaggtctagcagatctaaatcactgtttcgagacatgaggtcaagagagctgggt
ggttttagaaaacggcgctttattacccaaatgggatccgatttcactgaaatgggatcg
gtgacggtcgaacataacggcgaggaaacgccaccactgtctgtctctttttgcaagaca
agtaaatattcacatattttggcggtgtcggacgaggatggctatgtgagcatgtttgat
actcgtaccgaattcccttctgagaaagcaagaatcagtgactgggtagctcaccagaac
gccatctttgatgtttgttggattaaggaagataccaacatactcacagcttcaggcgat
caaactataaaggtatgggatgcacaagagaagaaatgtactggaatattgatggggcac
acaggaagtgttaaatctctgtctccccatccaacaaattcggatcttcttatctcggct
tccagagacgggtcatttgctatctgggatttgagatgcaagacaacttccaaaactaga
tgcagtgaagcacatgtcgctccagctgccatggtccaaggagctcatctttcttctcga
gcaaagcgggtcaggcgtggcaaggctgcttcgatgagcattacatcagttctttatctt
aaagacgaggtatccattgccactgctggagcagcagacagcattgttaaattctgggat
actagaaatctaaaggttcaggtcactcaggcatcccctaatatcaagtcatcaactgag
aaggaaagaagattacatggcatatctagtctgtcccaggatttaaatggcgtgtttctt
acagctacatgcatggacaatagaatatacttgtataatgtacttcagcttgataagggt
ccgatgcggtcattttctggatgtcggatagaatcattctatgtaaagtcaacaatcagt
cctgacgcagctcacatactcagtggctctagtgatggaaacgcctacatatggcaggtg
aacaagcccgatgtggatcccatcacattgaaaactcatgatggagaggttacagcagta
gattggtgtccatctgaggttgggaagatagcaacttcttcagatgattttacagttcgc
atctggaacattaatagcagttattgttcaagcacaacaagatctccatctgccattcga
aggagggtaatggcaatcccaagagaggaatgtagagaacttttgatgaatgatgaacga
attgatccaacaaaggttcctgacaatctgcttccttctgatgaagtgttcaaccaaaat
aacccacctattcctataacaatgcccacaattagtacccctgaagcccataagaaaaag
ttttcactagattctgattctaaagaaacttttgagaaaacccctgaagcagcgatgaag
agcccctcttctgtattgaaccctccttcttctttaaaaagaactatcagagattacttt
ctagcagcttaa
DBGET
integrated database retrieval system
