KEGG   Populus trichocarpa (black cottonwood): 7496843
Entry
7496843           CDS       T01077                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7496843
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7496843
   03041 Spliceosome [BR:pop03041]
    7496843
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     7496843
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     7496843
Spliceosome [BR:pop03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    7496843
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RRM_Nup35 BRAP2
Other DBs
NCBI-GeneID: 7496843
NCBI-ProteinID: XP_002298541
UniProt: B9GI65
LinkDB
Position
1:complement(35579733..35583263)
AA seq 373 aa
MDPHHNEPIHDGEPNDVKSTHIPKDDKPQPLSGDGASPGKIFIGGLARETTTAQFIKHFG
KYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDQVIQDTHIINGKQVEIKRTIPKGVVG
SKDFRTRKIFVGGIPAVVTEDEFNEFFTQFGEVTEHQIMRDHSTNRSRGFGFITFDTEQA
VDDLLARGNKLELAGTQVEIKKAEPKKANPPPPPSKRYNDSRPAFRGGFDDAYGGFGGSG
FGSVGGGYRSGGAYGSRAGAYSGYGGGEFGGYGGYGVGGIGAYRGEPSLGYTGRYGGLYS
RGYDLGGGGYGGPGENYGGYGGGSGGGGSASGYGGSYDTGLGGGYGGNGGGSMYGSRVGY
GGAGSGRYHPYGR
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggacccacaccacaacgaacccattcacgacggtgaacctaacgacgttaaatccacc
cacatcccaaaagatgacaagcctcaacccctctctggagatggagctagccccggaaaa
attttcattggaggtttagcaagagagactactactgcacaattcatcaaacattttggt
aaatacggtgaaattacggattccgtgataatgaaggaccggaagacagggcagccccgt
ggatttggctttgtgacctatgcagatccatctgttgttgatcaagtcattcaggatact
catattatcaatggcaaacaagttgaaatcaagcgaacaataccaaagggagtggttggg
tctaaggattttaggaccagaaagatttttgttggtggaatacctgcggttgtgactgaa
gatgagttcaatgaattctttacacaattcggagaggttacagaacatcagatcatgcgg
gaccactccaccaatcgttctcgtgggtttggatttattacatttgatacagagcaggca
gttgatgatctgttggccaggggaaataaactcgagctggctggaactcaggtggagatc
aagaaggctgagccaaagaaggcaaacccgcctccacctccatcaaagcgttataatgat
tcaaggcctgcgtttcgtggtgggtttgatgatgcttatggtggatttggaggcagtgga
tttggtagcgttggtggtggttataggtctggaggggcctacggaagtagagctggtgct
tatagtggatatggtggaggtgaatttggtggctatggaggatacggagttgggggtatt
ggtgcttacaggggagagccttccttgggatatactggtcgttatggaggactgtacagc
agaggttatgatttaggtggtgggggttatggtggccctggtgagaattatggcggatat
ggtggtggcagtggtggtggtggttctgccagcggctatggaggtagctatgacactggt
cttggaggtggctatggaggtaatggtggaggttccatgtatggaagcagagtgggatat
ggtggtgctgggagtggtaggtatcatccttatgggagatag

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