Populus trichocarpa (black cottonwood): 7496951
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Entry
7496951 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7496951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7496951
03036 Chromosome and associated proteins [BR:
pop03036
]
7496951
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
7496951
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
7496951
mRNA degradation factors
5'-3' decay
Decapping complex
7496951
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
piRNA pathway
7496951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
EPL1
Motif
Other DBs
NCBI-GeneID:
7496951
NCBI-ProteinID:
XP_024440677
LinkDB
All DBs
Position
14:5229544..5236142
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AA seq
505 aa
AA seq
DB search
MNNNNRGRYPPGIGAGRGGGMSANPNFQSRVPQQQYVQRHFGQNHHQQQYNQHQQNHNQQ
QQQQQQQQQHQQQQWLRRNQLAAADSSVDEVEKTVQSEAVDSSSQDWKAKLKIPPADTRY
QTEDVTATKGNDFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTG
KTAAFCIPALEKIDQDNNFIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLK
DDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVLDEADKLLSPEFQPSIEQLIRF
LPSSRQILMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLN
TLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR
NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL
YRIEQELGTEIKQIPPHIDQAIYCQ
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaatagaggaaggtatccgccagggatcggcgccggtagaggcggaggt
atgagtgcgaaccctaattttcaatccagggtgccgcaacagcagtacgtgcagagacat
tttgggcagaatcatcaccaacaacaatataatcaacatcaacagaatcacaatcagcaa
cagcaacagcaacagcaacagcaacaacatcagcagcagcagtggttgaggaggaatcag
ctagctgctgccgattcgagcgttgacgaggtcgaaaagactgttcagtctgaggccgtt
gactcgagttcacaagattggaaggcaaagctaaagataccaccagctgacacacgatac
caaactgaggatgtgacagccacaaaagggaatgattttgaggattattttctgaagcgt
gagttgcttatgggaatatatgagaagggttttgaaagaccatctcctattcaggaagag
agcataccaattgctcttactggcagtgatattctagctagagctaaaaatgggacaggg
aaaacagcggcattttgcattcctgccttggaaaagattgaccaagataacaattttatt
caagttgtgattcttgtgccaacacgtgagttggctcttcagacatcacaggtttgcaag
gagcttgggaagcatttgaaaattcaagtgatggccaccactggcggtactagtttaaaa
gatgacattatgcgtttatatcaaccagtccatttacttgttgggactccaggaagaata
ctagatcttgcaaaaaagggcgtgtgcattttgaaagattgttcaatgcttgttttggat
gaggccgataagcttttgtctccagagtttcaaccttcaatagagcagcttattcgtttt
cttccttcaagtcgtcagattttgatgttttcagctacatttcctgttactgttaaggac
ttcaaagatagatatctagagaagccttatgttatcaatcttatggatgaacttactctc
aagggtattacacaatattatgctttcgttgaagaacgacagaaagtccattgcttgaac
actcttttctctaagctgcaaataaaccaatcaatcatcttttgcaactcagtgaatcgg
gtagaattactggccaaaaagatcacagaacttggctattcctgtttctatatccatgca
aagatgttgcaagaccatcgtaacagagtatttcatgacttccgcaatggtgcatgcagg
aatcttgtctgcaccgatcttttcaccaggggtatagacatccaagcggtgaatgttgtt
ataaacttcgactttcccaagaactcagaaacataccttcacagggttggtcgatcagga
aggttcggacaccttggtttggctgtgaatttgatcacgtacgaggaccgctttaacttg
tataggattgagcaggaacttggaactgaaattaaacaaattcctccacatattgatcag
gcaatctattgccaataa
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