Populus trichocarpa (black cottonwood): 7496980
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Entry
7496980 CDS
T01077
Name
(RefSeq) ATP-dependent helicase BRM isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7496980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7496980
03036 Chromosome and associated proteins [BR:
pop03036
]
7496980
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
7496980
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
7496980
Chromatin remodeling factors
BAF complex
7496980
PBAF complex
7496980
GBAF(ncBAF) complex
7496980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
Bromodomain
HDA2-3
AAA_14
Motif
Other DBs
NCBI-GeneID:
7496980
NCBI-ProteinID:
XP_024440855
LinkDB
All DBs
Position
14:5576568..5589320
Genome browser
AA seq
2272 aa
AA seq
DB search
MQSGGGGGGGPSWVGPAGRAGSTSSAAASPSSSSSSAAVWNLQLGFDSVQQQQQQQQSRQ
ALQQQLLRKPEGNETLLAYQAGTLQGVTGGNNFASSPGSMQIPQQSRQLFDLARQHGSSQ
DGQNRNQGVEQQALNPIQQAYLQYAFQAAQQKSALAMQSQQQAKVGTLGSPAGKDHDMRV
GNLKMQELMSMQSANQAQASSSKNPSEHFSRGEKQVEQGQQQASEQRNEQKSPIQPTAIG
QLMPANVTRPMQAPQVQQNIQNMANNQLTMAAQMQAMQAWALERNIDLAQPANANLMAKL
IPVMQARMAAQLKANENNTSGQSSHLPVSKPQVASPSIANESSPHANSSSDISGQSGSVK
TRQTVPSGPFGSTSSGGIVNNPNNLTMQQQAFHSRENQAPPRQAVVLGNGMPANASQGAD
HTLPSKNALNSSETSQTQQFRQLNRSSPQSAGPSNDGGLGNHFSSQGRPAVQMAQQRTGF
TKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLELQLQQQLLPAGGSNLDRSGGK
IAEDQARHLESNDKGSKAMLSMNGQNFSKEEVFTGDEKATVSTMHMQKAPAVMKEPTPLV
ASGKEEQQTATCSVNSDQETEHGLLKTPVRSDLAADRGRGVASQFPASDAMQAKKPAQAS
TVVQPKDTGSARKYHGPLFDFPFFTRKHDSVGSTGMINTNNNLTLTYDVKDLLFEEGMEM
LNKKRSENLKKINGLLAVNLERKRIRPDLVLRLQIEERKLRLLDLQARLRDDVDQQQQEI
MAMPDRLYRKFVRLCERQRMELTRQVQASQKAIREKQLKSIMQWRKKLLETHWAIRDART
ARNRGVAKYHERMLREFSKRRDDDRNKRMEALKNNDVERYREMLLEQQTSISGDASERYA
VLSSFLTQTEEYLHKLGGKITAAKNQQEVEEAANAAAGAARLQGLSEEEVRAAAACAGEE
VLIRNRFVEMNAPWDSSSVNKYYNLAHAVNERVIRQPSMLRVGTLRDYQLVGLQWMLSLY
NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHNWLPSV
SCIYYVGGKDQRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD
RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQK
EAPMHDGEDDWLETEKKVIIIHRLHQILEPFMLRRRVQDVEGSLPPKVSIVLRCRMSSIQ
STIYDWIKSTGTIRVDPEDEKLRAQKNPAYQPKVYKTLNNRCMELRKTCNHPLLNYPYFN
DLSKDFLVQSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDG
TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA
RAHRIGQTREVKVIYMEAVVDKISSCQKEDELRSGGTVDLEDDLVGKDRYMGSIESLIRK
NIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETMHDVPSLQEVNRMIA
RSKDEVELFDQMDEEFDWTEEMTRYDQVPKWLRASSKEVDGTIAILSKKPSKAILFADVM
GMVSGEMETERKRVRPKGKKSPNYKEIDDENGDYSEASSDERNGYSAHEEEGEIQEIEDD
ESSDAVGAPPINKDQSEDDGPPCDGGYECHGALESTRNNDVLDEAGSSGSSSDSQRVTRM
ISPVSPQKFGSLSALDARPGSLPKKLPDELEEGEIAVSGDSHVDHQQSGSWMHDRDEGED
EQVLQPKIKRKRSIRLRPRHTVERPEEKSSNDVQRGDSCLLPFQMDHKYQAQLRSDTEMK
ALVEPSGFKHDQIDSSTSRRNLPSRRIAKTPKLHASPKSGRLHLQSAPAEDATEHSRVSL
DGKVPSTSGTSSLGTKMSDVIQRRCKNVIGKFQRRIDKEGQQIVPLLADLWKRIENSGHV
SGAGTNLLDLRKIEQRVDRLEYSGVMELVFDVQFMLKGAMQFYGFSHEVRTEARKVHDLF
FDILKIAFPDTDFREARNALSFSGPSSTSVSAPSAKQAALGLSKRNKSINNVEPDNSTTH
KPMQRGSIPNSEDIRSVRVPQKETRVGSGSGSSREQYHQDDSPLHPGELVICKKKRKDRD
KSAVRSRTGSSGPVSPPSMGRNITSPVLNSIPKDARLNTSPVLNSIPKDARLNTSPVLNS
IPKDARLSQQNTHQQGWVNQPQPPNGGAGSVGWANPVKRLRTDAGKRRPSHL
NT seq
6819 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctggtggtggtggaggaggggggcccagttgggtaggaccggctgggcgtgcg
gggtccacatcatcggctgcagcatcgccttcgtcttcgtcttcgtctgctgctgtatgg
aaccttcagttgggatttgattcggtacagcagcagcagcagcaacagcagtctaggcag
gcattacagcaacaattacttagaaaacccgaagggaatgaaacccttctagcttatcaa
gctggaactcttcaaggagttacgggagggaacaattttgcttcatctccaggctcaatg
caaatacctcaacagtccaggcaattatttgatttggctcgacaacatggttcctctcag
gacggacagaataggaatcaaggtgttgagcaacaggctttgaacccaattcaacaagca
tatcttcaatatgctttccaggccgcccaacaaaagtcagctttggcaatgcagtctcag
caacaagctaaagtaggaacactgggctctcctgctggaaaggatcatgacatgcgggtg
ggaaatttgaaaatgcaggaactcatgtccatgcagtcggcaaatcaggctcaggcttca
tcttctaagaacccatctgaacatttttctcgtggtgaaaaacaggtggaacaaggtcag
cagcaagcctctgaacagaggaatgagcaaaagtctccaatccagcctactgccattgga
caactaatgcctgcaaatgttactagacccatgcaggcaccacaggttcagcaaaacatc
caaaacatggcaaacaaccagctcacaatggctgctcagatgcaagcaatgcaagcatgg
gcacttgagcgcaacattgatctggcacaacctgcaaatgccaacttgatggcgaagctt
attccagtcatgcaggcaaggatggctgcacaactaaaggcaaatgaaaataatactagt
ggacaatcatcacatctccctgtgtcaaagccacaggttgcttctccatccattgcaaac
gagagttctcctcatgcaaattcatccagtgatatctctgggcagtctggctctgtaaaa
accaggcaaactgttccatctggtccctttggctcaacttccagtggaggcatagtgaat
aaccctaacaacctcacaatgcagcagcaggcttttcacagcagagagaaccaagcacct
cctcgacaggcagttgtgcttggaaatggaatgcctgcaaacgcaagccaaggtgcagat
catactctgccttcaaaaaatgcattaaacagctcagaaacttcacagacacagcaattc
aggcagctgaatcgatcttctccacaatctgctggtccttctaatgacggaggcttgggc
aaccacttctcttcacaaggcaggccagctgtccagatggcacaacagcgcactgggttc
actaaacagcagttgcatgttctgaaggctcaaattctagcatttaggcgactgaagaaa
ggagaaggtactcttccacaagagcttcttcgagctattgctccaccaccccttgagttg
cagctgcagcaacaacttctccctgcaggaggaagtaatctggacaggtcgggtggaaag
attgctgaagaccaagcaaggcatctggagtccaatgataagggttcgaaagcaatgcta
tctatgaacggacagaatttttctaaagaggaagtttttactggtgatgagaaagcaacc
gtctcaaccatgcatatgcaaaaggcaccggctgtgatgaaggaacccactccccttgtg
gcttctgggaaagaagagcagcaaactgctacatgttctgtcaattcagaccaggagact
gaacatggacttctgaaaactcctgttagaagtgatctagcagcagataggggaaggggc
gttgcttcacagtttcctgcatctgatgctatgcaagctaagaaacctgcacaagcaagc
actgtggtccagccgaaagataccggctctgccagaaagtatcatggaccattatttgat
tttcccttttttactaggaaacatgactctgttgggtcaactgggatgattaacacgaat
aataacctaacattgacctatgatgtcaaagatcttctttttgaggaaggcatggaaatg
cttaacaagaaaaggtcagagaatttgaagaaaatcaatggtctactagcagtaaattta
gagaggaaaaggattagaccagatcttgtgttgcggttacagattgaagagagaaagctt
aggcttttggatctacaggcgcgtttaagggatgacgttgatcaacagcaacaggaaatc
atggcaatgcctgacagactatataggaagtttgttcggctatgtgagcgtcaacggatg
gagctgacaaggcaggtacaggcctctcaaaaagccataagagagaagcaattgaaatcc
atcatgcagtggcgcaagaaacttcttgagactcattgggccatccgggatgcacgtact
gcccgtaacagaggagttgctaaataccatgagagaatgttgagggagttttcaaagaga
agggatgatgaccgaaataaaaggatggaggcattgaagaacaacgatgttgaaaggtat
agagaaatgttgttggagcaacagactagcatctcaggcgatgcttctgagagatatgcc
gttctctcgtcattcttgactcagacagaagaatatctccataagctgggaggtaaaata
acagctgctaagaatcagcaggaagtggaggaggcagctaatgccgcagcaggagctgca
cgactgcagggcctatcagaagaagaagtacgagcagctgcagcttgtgctggtgaggaa
gtattgataagaaaccggtttgtggaaatgaatgcaccctgggacagttcatctgttaac
aaatattacaatcttgcacatgctgtgaatgaaagggtcataaggcaaccatctatgtta
cgagttggaaccttacgagactatcagcttgttgggttgcagtggatgctttctttgtat
aacaacaaattaaatggaatcttggcagatgagatggggcttggaaagactgtacaggtg
atggcattgattgcttatctaatggaattcaaaggaaactatggaccacatcttataatc
gttcctaatgctgttttggtgaattggaagagcgagctacacaactggctgccatctgtg
tcctgcatttattatgttggtggaaaggatcagcggtcaaaattattttcccaagaggtt
tctgccatgaaatttaatgtccttgtgacaacttatgagttcatcatgtatgaccggtca
aaactttctaaagttgattggaagtacatcataattgacgaggcacagagaatgaaggac
agggagtcagttttagcccgtgatcttgatagatatcgctgccagaggcgcttacttctc
acagggacaccactacagaatgacttgaaggagctatggtcgctcttgaatctacttctg
ccagaagtttttgataatcgtaaagcatttcatgattggttctcaaagcccttccaaaag
gaagctccaatgcatgatggagaggatgactggcttgaaactgaaaagaaggtgatcata
attcatcgacttcatcaaattctagagccttttatgctcagacgtcgtgttcaagacgtg
gaaggttcacttccacccaaggtttccattgtcttgaggtgtagaatgtcttctatacag
agtacaatttatgattggatcaaatctactggcactattcgagttgaccctgaggatgag
aagctcagggctcaaaaaaatccagcataccagcctaaggtgtacaaaactttaaataac
agatgtatggagctccgaaaaacttgcaatcatcctttgcttaattacccatatttcaat
gacttatccaaggatttccttgttcaatcttgtgggaaactatggattctggataggatt
ctcataaaacttcaaagaacaggccatcgggtactactctttagtaccatgacaaaactc
cttgatatattggaggaatacttgcaatggcgccgactggtatacagaaggattgatgga
acaactagccttgaagatcgtgaatcggctatcgtggactttaatagccatgattcagac
tgctttattttcttgcttagtattcgtgctgctggaaggggtcttaatcttcagtcagct
gacacagttatcatatatgatcctgatccaaaccctaagaacgaggaacaggcagttgct
agagcccaccggattggacagacaagagaagtcaaagtcatttatatggaagcagttgtt
gacaaaatttctagctgtcaaaaagaggatgaattaagaagtggaggcaccgttgattta
gaagatgaccttgttggtaaggatcgatatatgggttctattgagagcctaataaggaaa
aacatccagcaatataagattgacatggctgatgaggttatcaatgctgggcgttttgat
caaagaacaacacatgaggagaggcgaatgactttagagacattattgcatgatgaggag
cggtatcaagaaactatgcatgatgttccatcactccaagaggttaatcgcatgatagcc
aggagtaaagatgaagttgaattatttgatcaaatggatgaagagtttgattggacggag
gagatgacgaggtatgatcaggtacctaaatggcttcgagccagttcaaaagaagtggat
ggtactattgctattctatcaaagaaaccatcaaaagctatcctttttgctgatgttatg
ggtatggtttccggtgaaatggaaactgaaagaaaacgggtgcggccaaaggggaaaaag
tctcctaattacaaggaaatcgatgatgaaaatggagactattctgaggcaagttctgac
gagagaaacggttattctgcacatgaagaagagggagaaattcaagaaattgaagatgat
gaatccagtgatgctgttggggcaccgcccattaataaggaccaatcagaagatgatggt
cccccgtgtgatggtgggtatgagtgtcacggagctttggaaagcactagaaataatgat
gtactagatgaagctggttcctcaggatcatcctctgacagccaaagagttacacgaatg
atctctcctgtctctcctcagaaattcgggtcactttctgcattagatgctagaccaggt
tcacttcccaaaaagctgccagatgaattagaagagggggaaattgccgtgtctggagat
tctcacgtggatcaccagcaatctggaagttggatgcatgatcgcgatgaaggtgaagat
gaacaggttctgcaacctaagattaaacgaaaacgtagtattcggcttcgaccccgtcac
actgttgaaaggccagaggagaagtctagcaatgatgtgcaacgtggagattcttgtttg
ttgccattccaaatggatcataaatatcaagcacagttgaggagcgatactgaaatgaaa
gcattagtagagcctagtggattcaagcatgatcagattgattcctcaacaagtaggcga
aatttaccttcaagaagaatagccaaaacacctaagttacatgcttcgccaaaatctggc
agattgcatttgcagtctgctccagcagaggatgctactgaacactccagagtgagtctg
gatggtaaagttccaagtacaagtggtacttcatctttgggcaccaagatgtctgatgtc
atccagagaaggtgtaagaatgttattggcaagttccaaaggaggatagacaaggaagga
caacaaattgtacctcttctagctgatttgtggaagaggattgaaaattctggtcacgta
agtggtgctggaactaatcttttggatttacggaagattgaacagcgtgttgacagattg
gagtatagtggagtgatggagcttgtgtttgacgtgcaattcatgttaaagggtgcaatg
caattttatgggttctcacatgaggttagaactgaagcaagaaaggtgcatgatctcttt
tttgatatcttgaagattgcatttccagacaccgatttccgagaggccaggaacgctcta
tctttctctggcccatcatcaacttccgtttctgctccgtctgcaaaacaagctgctctt
ggcctaagcaagagaaacaagtcaataaataatgtggaacctgacaacagcactacccat
aagccaatgcagcgaggatccattcctaatagtgaagacattaggagcgtccgtgtgccc
cagaaggaaacaagggttgggagtggaagtggcagtagtagggaacaatatcatcaggat
gattctccactgcatccaggggagttagttatctgcaagaagaagaggaaagaccgggac
aagtcagcagtgaggtcaaggactggatcaagtggtccagtctccccccctagcatgggc
cgtaatatcacgagtcctgttttgaattcaatacctaaagatgcgagactgaacactagt
cctgttttgaattcaatacctaaagatgcgagactgaatactagtcctgttttgaattca
atacctaaagatgcgagactgagccagcagaatacgcatcagcaagggtgggtgaaccaa
ccacaaccaccaaatggtggtgcggggagtgttggttgggcaaatcctgtaaagaggttg
aggacagatgctggtaaaagaaggccgagccatttatga
DBGET
integrated database retrieval system
