Populus trichocarpa (black cottonwood): 7496988
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Entry
7496988 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7496988
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7496988
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
7496988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_EML_2
Beta-prop_RSE1_2nd
WD40_CDC20-Fz
ANAPC4_WD40
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
RgpF
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
7496988
NCBI-ProteinID:
XP_024440917
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All DBs
Position
14:5706009..5717081
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AA seq
1124 aa
AA seq
DB search
MYMAYGWPQVIPLEQGLCPSSQKHIIYFKVINRLFLVVSPSHLELWSSSQHKVRLGKYKR
NAESLEREGENLLAVWRPDTKLIAILTSSFFLHIFKVQYSDKRIQIGGKQPSGLFLANVS
LLLSEQVPFADKDLTVSNFVSDNKHLLLGLSDGSLYSISWKGEFYGAFELDPCSRDSSDA
SVSPHSLGNGVASGRAPTDSESNHNITRKTAIVQLELCLLTRLLFVLYSDGQLVSCSISK
KGLKQVEYIKAEKKLGSGDAVCISVASDQQILAVGTRRGVVKLYDLAESASLIRTVSLCD
WGYSVDDTGPVSCIAWTPDYSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPKVK
PNQDRKYEPLMNGTSLMQWDEYGYRLYVIEEGSLERVIAFSFGKCCLSRGVSGMTYVCQV
IYGEDRLLVVQSEDTDELKFLHLNLPVSYISQNWPVQHVAASKDGMHLAVAGLHGLILYD
IRLKKWRVFGDITQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCR
KPLLAKPMVMDVYQDHILVTYRPFDVHIFHVRLLGELTPSSTPDLQLSTVRELSIMTAKS
HPAAMRFIPEQLQRELASNNHISSSDLMDREPARCLILRTNGELSLLDLDDGRERELTDS
VELFWVTCGQSEEKTSLIEEVSWLDYGHRGMQVWYPSAGADPFMQEDFSQLDPELEFDRE
AYPLGLLPNAGVVVCVSQRMSFSACTEFPCFEPSSQAQTILHCLLRHLLQRDKKEEALRL
AQLSAEKPHFSHCLEWLLFTVFDAEISRQNANKNQISVPLHAGNRSLLEKTCDLIRNFSE
YFDVVVSVARKTDGRHWADLFSAAGRSTELFEECFQQRWYRTAACYILVIAKLEGPAVSQ
YCALRLLQATLDESLYELAGELVRFLLRSGKEYDQTPPDSDRLSPRFLGYFLFRSSYKKP
SLDKSTSFKEQSAHVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYGS
ARLENFASGLELIGQKLQMGTLQSRLDAEFLLAHMCSVKFKEWIVVLATLLRRTEVLFDL
FQRDMRLWKAYSVTLQSHPAFSEYHDLLEGLEERLSSVADSQEK
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatatggatggccgcaggttatacctctagaacaaggactctgtccttct
tcacagaagcatatcatttatttcaaagtcatcaatcgtctcttcctcgttgtctctcct
tctcaccttgagctctggagctcctctcagcataaagtgaggttaggcaagtacaagagg
aatgcagagtcgttggagagagaaggcgagaatttactagcggtgtggagacctgatacc
aaattgatcgccattcttacatcatctttctttctacatatattcaaggttcagtactct
gataaaagaatacaaataggagggaagcaaccttctggtttgtttcttgctaatgtatct
cttcttcttagtgagcaagtgccttttgcagataaggacttgacagtgagcaattttgta
agtgataacaaacatttgctactaggactttccgatggatctttatacagtatctcctgg
aagggggagttctatggagctttcgaacttgatccctgttcacgtgacagcagcgatgcc
tctgtttcacctcattctttaggtaacggtgttgcttctggaagggctccaacagattcg
gaatctaatcataatatcaccaggaagaccgctattgtgcagctggagctttgcttgctg
acgaggttgctgtttgtcttgtattctgatggacaactagtatcatgctctataagcaag
aaaggtttaaagcaagttgaatatatcaaagctgaaaaaaagttgggttctggtgacgct
gtatgcatttcagtagcttcagatcaacaaatccttgctgttggtaccagaagaggggtt
gttaagttatatgacctagcagaatctgcatctctcattcgtactgtgtctttgtgtgac
tggggctattcagtggatgatactggtcctgtcagttgtatcgcatggacacctgattat
tctgcttttgctgttgggtggaagctaagaggtcttacagtctggtctgtatctggctgt
cgtttgatgtcaacaattcgtcaaattggtttaagttctgtatcttctccaaaggttaag
ccaaaccaagatcgtaaatatgaaccattgatgaatggcacctcattgatgcagtgggat
gaatatggttacaggctttatgtgattgaagaaggatctctggaaagagttattgcattt
tcatttggaaaatgctgcctttccagaggagtttcaggaatgacatatgtttgtcaagtt
atttatggcgaagatcggttgcttgttgttcagtccgaagatactgatgaactcaaattt
ttacatctaaaccttccagtttcctatatctcccaaaactggccagttcaacatgttgca
gctagcaaggatggaatgcacttagctgttgctggcctccatggattgatcttatatgat
atacggttgaaaaagtggcgagtgtttggagatattactcaggaacaaaagattcagtgc
aaagggttgttatggctggggaagattgttgttgtttgcaactacattgattcttctaac
acgtatgaattacttttttatccaagataccatcttgaccagagctccttgctttgtcga
aagccattgcttgctaaaccaatggtgatggatgtctatcaagaccatatacttgtcacc
tatcgcccatttgatgtccacatattccatgtgagactgttaggtgaactgactccttct
agcactccagatttgcagctttctacagtacgagaactttctatcatgactgcaaagagc
catcccgcagctatgcgtttcatccctgaacagcttcaaagagagttggcctcaaacaat
catatttcatcttcagatttgatggacagagagcctgcaagatgtttgatattgagaaca
aatggggaactttcgcttttggatttggatgatggacgtgagagagagctcaccgactct
gttgaattattttgggttacatgtggtcaatcagaggagaagacaagtctaattgaggaa
gtctcttggctggattatggccatcgaggcatgcaagtttggtatccatctgcaggtgct
gatccttttatgcaggaagacttttcgcagttggatccagagctggaatttgatcgtgaa
gcgtatcctttagggcttcttccaaatgccggggttgttgtttgtgtctcccagagaatg
tccttttcagcttgcactgaatttccatgttttgagccatcttctcaagctcaaactata
ttgcattgcttactcagacaccttcttcagagggacaaaaaagaggaggctttacggtta
gcacaattatctgcagaaaagcctcacttttcccattgcctggagtggcttctttttact
gtatttgatgcagagatttcaaggcaaaatgcaaacaagaaccagatatcagtccctcta
catgctggcaaccgctctcttttggagaagacttgtgatttgatcagaaatttctccgag
tattttgatgtagttgtgagtgttgcaagaaaaactgatggtcgacactgggcagattta
ttttctgctgctggaagatcaacagagttgtttgaagaatgcttccaacagagatggtac
cgcactgcagcttgctatatacttgtgattgcgaaacttgaaggtcccgcagtcagccaa
tactgtgctttacggttattgcaggcaacactcgatgaatctttatatgagcttgctgga
gaactggtgcgcttcctgctcaggtctggaaaggaatatgaccagacaccacctgattca
gatagactatctcccagatttttgggttattttcttttccgttccagttacaagaagcca
tcattggacaagagtacttccttcaaagagcaaagtgctcatgttgcttctgtgaagaac
attttagaaagccatgctagttatttgatgtcagggaaagagctttcgaagcttgtggct
tttgtaaaaggcacccagtttgatttagtggaataccttcaacgagaaagatacggtagt
gctcgcttagagaattttgcatcaggactggaactaattgggcagaagcttcaaatgggt
acattgcaaagccggttggatgcggagtttctattggctcatatgtgttccgtcaagttc
aaggaatggatagttgttcttgccacactcctaagacggactgaggttctttttgatctt
ttccagcgtgatatgaggttgtggaaagcatatagcgtcacccttcagtcgcaccctgca
ttttccgaataccatgatctgcttgaaggcttagaagagagactttcatctgtcgcagac
tcgcaagagaaatga
DBGET
integrated database retrieval system
