Populus trichocarpa (black cottonwood): 7497215
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Entry
7497215 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7497215 isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7497215
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
7497215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
7497215
NCBI-ProteinID:
XP_024450881
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All DBs
Position
2:12397328..12409457
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AA seq
1122 aa
AA seq
DB search
MYMAYGWPQVIPLEQGLCPSQQRIIYFKVINRLFLVVSPSRLELWSSSQHKVRLGKYKRD
AESLEREGENIQAVWSPDTKLIAILTTSFFLHIFKVQFSEKRIQIGGKQPSGLFLANITL
VLNEQVPFADKELTVSNFVSDNKHMLLGLSNGSLYSISWKGEFYGAFEINPYSRDSSDTS
ISPHSLGNGFASGRASSGSVSNHNITRKTAIVQLELCLPMRLLFVLYSDGQLVSCSVSKR
GLKQVEYIKPEKKLGSDDAVCTSVASDQQILAVGTRRGVVELYNLAESASLIRSVSLSDW
GYSMDETGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSLSSPKVKPN
QECKYEALMNGTSLMQWDEYGYKLYVIEEESLERVIAFSFGKCCLSRGVSGMTYVRQVIY
GEDRLLVVQSEDTDELRILHLNLPVSYISQNWPVQHVAASKDGMHLAVAGLHGLILYDIQ
LKKWRVFGDITQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKP
LLAKPMVMDVYQDHILVTYRPFDVHIFHVRLLGELTPSSTPDLQLSTVRELSIMTAKSHP
AAMRFIPDRLPRELASDNHISSSEFLDTEPARCLILRTNGELSLLDLDDGHERELTDSVE
LFWVTCGQSEEKASLIEEVSWLDYGHRGMQVWYPCPGADPFKQEDFLQLDPELEFDREVY
PLGLLPNAGLVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRDKTEEALRLAQ
LSAEKPHFSHCLELLLFTVFDAEISRQNVIKNQVSVPKHAGNCSLLEKTCDLIRNFSEYL
DVVVSVARKTDGRYWADLFSAAGRSTELFEECFLRRWYRTAACYILVIAKLEGPAVSQYC
ALQLLQATLDESLYDLAGELVRFLLRSGKEYDQTSTDSDMPSPRFLGYFLFHSSYKKPSL
DKSNSLKEQSAHIASVKSILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYGSAR
LENFASGLELIGQKLQMGMLQSRLDAEFLLAHMCSVKFKEWIVVLATLLRRAEVLFDLFQ
HDIRLWKAYSITLQSRPAFSEYHDLLEGLEERLSSVSNLQEK
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatacggatggccgcaggtgatccctctagaacaaggactctgtccttca
cagcagcggatcatttatttcaaagtcatcaatcgcctcttccttgttgtctctccttct
cgcctcgagctctggagctcctctcagcataaagtgaggttaggcaagtataagagagat
gcggagtcgttggagagagaaggcgaaaatatacaggctgtgtggagtcctgataccaaa
ctgatagccattcttacaacatctttctttttacatatattcaaggttcaattctctgaa
aaaagaatacaaattggagggaagcaaccatctggcttgtttcttgctaatataactctt
gttcttaatgagcaagtgccctttgcagataaggaattgacagtgagcaattttgtaagt
gataacaaacatatgttactaggactttccaatggatctctatacagtatctcctggaag
ggagagttttatggagcttttgaaattaatccctattcacgtgacagcagtgatacctcc
atctcaccacattctttaggtaacggttttgcttctggaagggcttcttcaggttctgta
tctaatcataatatcaccaggaagactgctattgtgcagctggaactttgcttgccgatg
aggttgctgtttgtcttgtattctgatggacaactagtatcatgctctgtaagcaagaga
ggtttaaagcaagttgaatatatcaaacctgaaaaaaagttaggttctgatgatgctgta
tgtacttcagtagcttcagatcaacaaatccttgctgttggtaccagaagaggggttgtt
gagttatacaacctagcagaatctgcatctctcattcgttctgtgtctttgtctgactgg
ggctattccatggatgaaactggtcctgtcagttgtatcgcgtggacacctgataattct
gcttttgctgttgggtggaagttaagaggacttacagtatggtctgtatctgggtgtcgt
ttgatgtcaacaattcgtcaaattggtttatctttatcttctccaaaggttaagccaaac
caagaatgtaaatacgaggcattgatgaatggcacctcattgatgcagtgggatgaatat
ggttataagctttatgtgattgaagaagagtctcttgagagagttattgcattttcattt
ggcaaatgctgcctctccagaggagtttcaggaatgacatatgttcgtcaagttatttat
ggtgaagatcggttgcttgttgtacagtccgaagatactgatgaactcagaattctacat
ctaaaccttccagtttcctatatctcccaaaactggccagttcaacatgttgcagctagc
aaggacggaatgcacttagctgttgcaggcctccatgggttgatcttatatgatatacag
ctgaaaaagtggcgagtgtttggagatattactcaggaacaaaagattcagtgtaaaggg
ttattatggctagggaagattgttgttgtctgcaactacattgattcttctaacacgtat
gaattacttttttatccaagataccaccttgaccagagctccttactttgtcgaaagcca
ttgcttgctaaaccaatggtgatggatgtctatcaagaccacatacttgtcacatatcgc
ccgtttgatgtccacatattccatgtgagattgttaggtgaactgactccttctagcact
ccagatttgcagctttctacagtacgagaactttctatcatgactgcaaagagccatcct
gcagctatgcgtttcatccctgaccggcttccaagagagttggcctcagacaatcatatt
tcatcgtcagagtttttggacacagagcctgctagatgtttgatactgagaacaaatggg
gaactttcgcttttggatttggatgatggacatgaaagagagctcactgactctgttgaa
ttattttgggttacttgtggtcaatcagaggagaaggcaagtctaattgaggaagtctct
tggctggattacggccaccgaggcatgcaggtttggtatccatgtccaggtgctgatcct
tttaaacaggaagactttttgcagttggatccagaactagaatttgatcgtgaagtgtat
cctctagggcttcttccaaatgccgggttggttgttggtgtttcccagagaatgtccttt
tcagcttgcactgaatttccatgttttgagccatctcctcaagctcaaaccatactgcat
tgcttactcagacaccttcttcagagagacaaaacagaggaggctttgcggttagcacaa
ttatcagcagaaaagcctcacttttcccattgcctggaattgctcctttttactgtattt
gatgcagaaatttcaaggcaaaatgtgatcaagaaccaggtatctgtccctaaacatgct
ggcaactgctctcttttggagaagacctgtgatttgataagaaacttctcagagtatctt
gatgtagttgtgagtgttgcaagaaaaactgatggtcgatattgggcagatttattctct
gctgctggaagatcaacagagttgtttgaagaatgcttcctaaggagatggtatcgtact
gcagcttgctatatacttgtgatcgcgaaacttgaaggtcctgctgtcagtcaatactgc
gccttacaattattgcaggcaacacttgacgaatctttgtatgaccttgctggagaactg
gtgcgcttcttgctgaggtctggaaaggaatatgaccagacatcgactgattcagatatg
ccatctcccagatttttgggttattttcttttccattccagttacaagaagccatcattg
gacaagagtaattccttgaaagagcaaagtgctcatattgcttctgtgaagagcatctta
gaaagccatgctagctatttgatgtcagggaaagaactttccaagcttgtggcttttgta
aaaggcactcagtttgatttagtggaataccttcaacgagaaagatatggtagtgctcgc
ttagagaattttgcatcagggctggaattgattgggcagaagcttcaaatgggaatgttg
caaagccggttggacgcagagtttctattggctcatatgtgttctgtgaagttcaaggaa
tggatagttgttctggccacacttttaagacgagctgaggttctttttgatcttttccag
catgatatcaggttgtggaaagcatatagcatcacccttcagtcacgccctgcattttct
gaataccatgatctgcttgaaggcttggaagagagactctcatctgtctcaaatttgcaa
gagaaatga
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