Populus trichocarpa (black cottonwood): 7497271
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Entry
7497271 CDS
T01077
Name
(RefSeq) serine/arginine-rich splicing factor RS31 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7497271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7497271
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
7497271
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
SET_assoc
Nup35_RRM_2
RNA_bind
RRM_5
RRM_Nup35
DUF1866
TYW2_N_arc
RRM_8
Motif
Other DBs
NCBI-GeneID:
7497271
NCBI-ProteinID:
XP_002302651
UniProt:
B9GR47
LinkDB
All DBs
Position
2:complement(13499127..13501915)
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AA seq
245 aa
AA seq
DB search
MARPVFVGNFEHETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDDRDAADAVRGLDNIP
FGYDRRRLSVEWARGERGRHRDGPRSTANQRPTKTLFVINFDPIHTRVEDIKRHFERYGE
VLHVRIRRNFAFVQFETQEDATKALECTHMTKILDRVVSVEYALRDDSERGDRYDSPRRG
SYNGRSPSPVYRRRPSPDYVRARSPVYDKYNGPVYDRRQSPDYGRNRSPEYGRNRSPSPI
RRSRT
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggccagttttcgtgggaaactttgagcacgagacaaggcaatcggacttggaa
cgcttgttcagcaagtacggaagggtggagcgagttgacatgaaatctgggtttgctttt
gtttattttgaggatgaccgtgatgctgcagatgctgtacgtggacttgacaatatacct
tttggttatgacaggcgaaggctttcagtggagtgggctcggggtgaacgtggtcggcac
cgagatgggccaaggtcgacagcaaaccagaggccaactaaaacattgtttgttattaat
ttcgatccaattcataccagggttgaagacataaagagacactttgagcgttatggagag
gtgctgcatgtccgaattcgacggaactttgcatttgtgcagtttgagacacaagaagac
gccaccaaagctctcgagtgcacacacatgaccaagatattggacagggtggtttctgtt
gagtatgctttgagggatgacagtgagaggggtgacagatatgatagtcccagaagagga
agttataatggaagatcaccaagtccagtttatcgcagacggccaagtcctgattatgtt
cgagctcgcagccctgtttatgataagtataatggtccagtatatgacaggcgccaaagt
cctgattatggtaggaacagaagccctgagtatggcagaaaccgaagtccgtctccaatt
cgaagatcgagaacatga
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integrated database retrieval system
