Populus trichocarpa (black cottonwood): 7497327
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Entry
7497327 CDS
T01077
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03420
Nucleotide excision repair
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7497327
09124 Replication and repair
03420 Nucleotide excision repair
7497327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7497327
03400 DNA repair and recombination proteins [BR:
pop03400
]
7497327
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
7497327
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
7497327
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
WD40_Gbeta
WDR55
Beta-prop_EML_2
EIF3I
DSE1_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_EIPR1
ANAPC4_WD40
NBCH_WD40
Beta-prop_NOL10_N
WDR90_beta-prop_4th
PAC11
Beta-prop_SCAP
Beta-prop_SPT8
TRM82_WD
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
WD40_RFWD3
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_ACSF4
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_DCAF12
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
7497327
NCBI-ProteinID:
XP_024439985
LinkDB
All DBs
Position
14:953134..957578
Genome browser
AA seq
452 aa
AA seq
DB search
MWREIRDREAGKTRPNSFKNRVSSSRISNLQLSNYKDVVSPHRGSINSLQVDLTEGRYLL
SGASDASASVFDIQHATDFEGGGEGALIAKHKSLITIDKQHQNGHKFAISSAIWYPIDTG
LFVTGSYDHYIKVWDTNSTQMVINFKLPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDI
ASGAFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLG
RRPPVLARSAVSKVSTSKALSKGQNLLGKPRMPQKKSGGGNGIKHSPLGQVPAKGYLKQR
LHPGMLSSQDRATAHYGAVTGLKITEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETARL
QTSKPIQLATAQDSNLVFVPCMTSVKAFDVWSGKTYVTFRGHYEHVNCCWFSSQDQELYT
GGNDRQILVWSPARLIPNEDASPAEDQDNWSD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtggagggaaatcagagacagagaagcgggcaaaacccgccccaattcattcaagaac
cgggtcagttcctccaggatctctaatcttcaactctccaattacaaagacgttgtctcc
cctcacagaggttccatcaactctcttcaggttgatttgacagaggggagatacttatta
tccggggcatcagatgcatcagcttctgtttttgatattcaacatgccacggattttgaa
gggggaggagaaggagctctgattgccaagcacaagtctttaattactattgacaagcaa
catcaaaatggtcataaatttgccatatcttctgctatttggtatccaattgacacgggc
ctatttgttactggttcttatgatcattatattaaagtttgggatacaaattccacccag
atggttatcaatttcaaattgcctggaaaggtgtatagaactgcaatgtctccgttggca
acttctcatatgttaatagccgctggaactgaagatgttcaagttcgactctgtgatatt
gcttcgggggcatttgcgcatacgctatctggtcatcgtgatggtgttatgacagtggaa
tggtctacttcaagtgaatgggttctggttactgggggatgtgacggtgccatacggttt
tgggatatcaggcgtgctggatgttttcttgttttggatcagtcccagtctcagcttggc
agacggccacctgtgcttgcacgatctgccgtgagtaaggtttcaacttcaaaggcacta
tctaaaggccaaaatctccttggaaaaccaaggatgcctcaaaagaaatctggtggtggg
aatggaataaagcattcacctcttggtcaagttccagccaagggatatctaaagcaacga
ttacatccagggatgttgtcaagtcaggatcgtgccactgcacattatggtgctgttact
ggtttaaaaataactgaagatggcatgtatcttctaagtgcaggatcagattcaagaata
aggttgtgggatgtcgaatcaggccgcaatacccttgtgaactttgaaactgcacgctta
caaactagcaagccaattcagttggccacagctcaggattcaaatctcgtttttgttcca
tgcatgacctctgtgaaagcatttgatgtttggtcgggtaagacgtatgtgacatttcgt
ggccattacgagcatgtgaactgttgctggtttagttctcaagatcaggaactgtacaca
ggtggcaatgatagacaaattctagtttggtccccggccagattgattcccaacgaggat
gcaagtccagctgaggatcaagataactggagcgattga
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