Populus trichocarpa (black cottonwood): 7497338
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Entry
7497338 CDS
T01077
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7497338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7497338
03036 Chromosome and associated proteins [BR:
pop03036
]
7497338
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7497338
Coactivators
SAGA/TFTC/STAGA complex
7497338
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
7497338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
7497338
NCBI-ProteinID:
XP_024440625
LinkDB
All DBs
Position
14:complement(1112743..1119473)
Genome browser
AA seq
920 aa
AA seq
DB search
MDPNIMRLLEEDEDETMHSGADVEAFQAALNRDIGGDVSNSQPSDSSAGKIGNANNTEEL
DAKNVQRQHHQEQHTSAMETKQNGPNAENQQQQGGFPQEPTRPPLLKKTSQDDIKQELVE
QAPLQTPQSIGMQSYEKNPIPKSEPDKMQSSDGDPHFLNFQKMSNQQTAGTDQAGNQKNS
KQIPFAILLPALKPHLDKDREMQLQTLYNKLRKNEIAKDQFVRLMRNIVGDQVLRLAAAQ
LQSQPGTNQSQLQPQAGRQLDGRMPAGISAAQFPDPHHSVLHPRGSIPAEPSHNPPSAVQ
LQTDSSIVNSQKSKAVEWKPDSLVMQASQSHSSNASISNQERERSSIAMQGQNKQQQHVN
FPPTSFPMYGSSGGNYHPYSGTNVSTSGPSVKPQPHDPQTRQILHHQNLGVTQIGGPMHS
MISTPKFERQNSADDPSRVHSGSVSHYTNKSALQQNSAPWQAPSNREKSPASFSSLNYVK
PGLLEQAGEQQNKPQLSSPQVLSPSPVEKGNAISGNLKDQSLDKQSTKIVFSTVPPNSAP
PSIATQMDPNGQAGSRISSVASPAGVNARTPPKKPSVGQKKPFEALGSSPPASTKKHKVS
GAFSDQSIEQLNDVTAVSGVNLREEEEQLFSGPKEDSRVSEASRRFVQEEEERLMLQKTP
LKKKLGEIMAKCGLKNFGTDVERCLSLCVEERMRGLISNMIRLSKQRVDAEKPRHQTLIT
SDVRQQIMTMNRKAQEELEKKQAEAEKLQKVNEPEGDNGGEGEKEKDEGRVKSVKVNKEE
DDKMRTTAANVAARAAVGGDDILSKWQLMAEQARQKREGGMEGASGSQPVKDVNRKPLSP
SGRNMMENLEAEKRSHVVPSSASGAGRKCGRNQAIVPQTKVVRTISVKDVMSVLEREPQM
SRSTLIYQLYERIRSDATAE
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggaccctaacataatgaggcttctcgaagaagacgaggacgaaaccatgcattccggt
gctgatgtggaggctttccaagctgccctgaacagggatattgggggcgacgtgtccaac
tcgcagccgtctgattcgagtgcggggaaaattggcaatgccaataataccgaggaactt
gatgcaaaaaatgttcaacgacaacatcatcaggagcagcacacatctgcaatggagaca
aagcagaatggacctaatgctgagaaccaacagcagcaggggggtttcccacaggaacca
acccgcccgccattacttaagaaaacatcccaagatgatattaaacaagagcttgtggaa
caggctcctctccagactcctcaatcgattgggatgcaaagctatgagaaaaatcctatc
ccaaaatccgagcctgataaaatgcaaagttctgatggtgatcctcactttttaaatttt
cagaagatgagcaatcagcaaactgcaggcacagatcaggcaggcaaccaaaagaatagc
aagcagataccttttgcgatattgttgcctgccttaaagcctcatcttgataaagacaga
gagatgcagctacaaactttatataataaactgaggaaaaatgaaattgcaaaagaccaa
tttgtcagactcatgagaaatattgttggggatcaagtgctcaggctggcagctgcacaa
ctgcaatcacagccaggtaccaaccaatcccagttacagcctcaagctggtcgccagctc
gatgggcgaatgcctgctggtatcagtgctgctcagtttcctgatccacatcattctgta
cttcatccgaggggatctattcctgcagaaccatctcataatcctccttcagcagtccaa
ttgcagactgattcaagcattgtcaattctcagaaatccaaagcggtagaatggaagcca
gattctcttgtaatgcaagcaagccaatcacattcctccaatgccagcatttccaatcaa
gaaagagagcgatcctcaattgcaatgcaagggcagaacaagcaacaacaacatgtgaac
tttccaccaacttcctttccaatgtatggaagcagtggtggtaattaccatccatattct
gggacaaatgttagtacttcaggaccatctgtgaagccacaaccccatgatccacaaaca
aggcaaattctacatcatcaaaatctgggtgtgactcaaataggagggccaatgcacagc
atgataagcacgccgaagtttgagaggcaaaattctgctgatgatcctagtagagtgcac
agtggttctgtttcccattatacaaacaaatcagcattgcaacagaattcagctccttgg
caagcaccatcaaatagagagaaaagtcctgcttcattctcttcgttgaattatgtaaaa
ccaggtttgcttgaacaggctggtgagcagcagaacaaaccccagttgtcgagccctcaa
gtgctgtctccatcacctgttgaaaagggaaatgcaatttcaggaaatttaaaggatcaa
tctttagacaagcagtccactaaaattgttttttcaacagtgcctcccaattctgccccc
ccttcaattgcgactcaaatggaccccaatggccaggcaggctcgcgaatctcatctgta
gcttctcctgctggagttaatgcaagaacacctcccaaaaagccttctgttggccaaaag
aagccatttgaagcacttggttcttctccacctgcgtcaactaagaagcataaggtatct
ggggctttttcggatcaaagcattgaacaactcaatgatgtcactgctgtcagtggagtt
aatctcagggaagaggaagaacagctattttcagggccaaaggaggacagtcgagtttcc
gaagcatctcgacggtttgtacaagaagaagaagaaaggctgatgttgcagaaaactcct
ttgaagaaaaaattaggagagatcatggccaaatgtggtttgaagaactttggcactgat
gtggagcgatgcttgtccttgtgtgtggaagaaaggatgcgcggactaataagtaacatg
ataaggctgtcaaaacagcgtgttgatgccgagaagccaagacaccagactctaatcact
tcagatgttcggcaacagatcatgacaatgaaccggaaagctcaggaagaattggagaaa
aagcaggctgaagcagaaaagctccaaaaagttaacgaaccggagggtgacaatggaggt
gaaggtgagaaggagaaagatgaaggtcgagtgaaatcagtgaaggttaacaaagaggag
gatgacaaaatgaggacaacagctgctaatgttgctgctcgagcagctgttgggggagat
gacatactgtcaaaatggcaactaatggctgagcaagcccggcagaaacgtgaaggaggg
atggagggggcatccggttcccagccagttaaagatgtgaaccgcaaacctctatcacca
tcaggaagaaatatgatggaaaatctcgaagcagaaaaaaggagccatgtggttccttct
tctgcatctggagctggtaggaaatgtggaaggaatcaagcaattgtgcctcaaaccaaa
gtggtccgtaccatttctgttaaggatgtaatgtcagtgctggaaagggaacctcagatg
tccaggtctactctgatttaccaactgtacgagcgaatcaggtctgatgctacagctgaa
taa
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