Populus trichocarpa (black cottonwood): 7497427
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Entry
7497427 CDS
T01077
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
7497427
Enzymes [BR:
pop01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
7497427
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
7497427
Prokaryotic type
7497427
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
7497427
NCBI-ProteinID:
XP_024438751
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All DBs
Position
13:complement(14963480..14968255)
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AA seq
520 aa
AA seq
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MAISSLRFPLSPWLLLKTPKLKPSFRFSFPILPSSRHTQLLLLCSYSQSPPSISPPLTDS
NSNQSLHSKWESIRKKKVALRVGYVGTDYRGLQKQHDQHSLLTIEGELERAIYEAGGIRE
SNYGNLNKISWARSSRTDKGVHSLATTITMKMEIPENAWKDDLYGMVLAKHVNSYLPDSI
RVLSILPAQKSFDPRRECDIRKYSYLLPAEVIGIKSHFSMAEIDDHISDFNNILNAFEGD
HPFHNYTVRSKYRRKYPTKNGHVSKRARSSWGTSASGSEESDDEENLEIDGTSSSDHVEL
SQNSLESSICDLNGDILKDQSSNLPLRARWLHEPDETDRIGAAHFRKIFRCSCGKLEKSL
GFDFVEISIWGESFMLHQIRKMVGTAVAVKRKVLPRDLIMLSLTKFSRIVLPLAPSEVLI
LRGNDFSLRKKSGEGKRPEMETMVESEEILRAVNEFYSTMMLPQVSKFLDPCMPLWKEWV
ENLDKYTSIPDAQLDEVRIARKVWMENFKIRKSIESVVNQ
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcaatctcttctctccgtttcccgctctctccatggctgctcctcaaaaccccaaag
ctaaaaccctccttcagattttcatttccaatcctaccctcttcaagacacactcaatta
ctactcctatgctcttactctcaatctccaccgtccatttctcctcccttaacggactca
aactcaaatcagtccctccattcaaaatgggaatctattagaaagaaaaaggttgctttg
cgggttggctatgtgggtactgattatagaggtcttcaaaagcaacatgaccagcattca
ttattgactattgaaggagaattggaacgtgctatatatgaggctggtgggattcgtgaa
agtaattatggcaatttgaataaaatttcgtgggctagaagtagccggacagacaaagga
gttcactcattggcaacaactataacaatgaaaatggagataccggaaaatgcatggaag
gatgacctttatggaatggttcttgcgaaacatgttaactcttatctccctgatagtatt
agagttttgagcatcttaccagcacagaagagttttgatcccagaagggagtgtgatata
cggaaatactcttatctccttcctgccgaagttattggcatcaaaagtcacttcagcatg
gctgaaattgatgatcacatatcagacttcaataacatattaaatgcatttgagggagac
catccttttcataattatacagtacggtcgaagtaccggagaaaatacccaacaaaaaat
ggccatgtgtcaaagagagctagatcatcttgggggacatcagcctctggatctgaggaa
agtgatgatgaagaaaatttggaaattgatggaacaagttcatcagatcatgtggaattg
agtcagaactctttggaatccagcatttgtgatctgaatggggatattttgaaggatcaa
agttcaaatttacctcttcgtgcaagatggctacatgaacctgacgagacagacagaata
ggtgctgcccacttcagaaagatttttcgttgttcttgtggaaagctggagaaatctctt
ggatttgattttgttgagatttctatatggggagagtctttcatgttacatcagatccgc
aaaatggtagggacagctgtggctgtaaagcggaaggtacttccaagagatctcataatg
ttgtcactgacaaagttctcaaggattgttctaccccttgctccatctgaagttctgatt
ttgaggggaaacgatttttccttgagaaaaaaatctggtgaagggaaaaggcctgaaatg
gagacaatggtcgaatcagaagagattctcagggctgtgaatgagttctattctactatg
atgctacctcaagtttcaaaattcttggacccttgcatgcctctctggaaggaatgggtt
gagaatttggacaagtacacaagcattcctgatgcacaattggatgaagtcaggattgct
cggaaagtctggatggaaaattttaagatcaggaaaagcattgaatctgttgtaaatcag
tga
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